// This model generated automatically from SBML
// WARNING: Renamed variable _space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate to xxx_space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R02055: Phosphatidylserine <=> Phosphatidylethanolamine 
// R01799: Phosphatidate <=> CDP_minus_diacylglycerol 
// R00842: sn_minus_Glycerol_space_3_minus_phosphate => Glycerone_space_phosphate 
// R00851: sn_minus_Glycerol_space_3_minus_phosphate Acyl_minus_CoA <=> _space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate 
// R01801: CDP_minus_diacylglycerol <=> Phosphatidylglycerophosphate 
// R01800: CDP_minus_diacylglycerol <=> Phosphatidylserine 
// R02241: Phosphatidate <=> _space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate Acyl_minus_CoA 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E1_space_1_space_1_space_94 = 0 M;
  real E2_space_3_space_1_space_15 = 0 M;
  real E2_space_3_space_1_space_51 = 0 M;
  real E2_space_7_space_8_space_5 = 0 M;
  real E2_space_7_space_7_space_41 = 0 M;
  real E2_space_7_space_8_space_8 = 0 M;
  real E4_space_1_space_1_space_65 = 0 M;
  real Glycerone_space_phosphate(time) M;
  real Acyl_minus_CoA(time) M;
  real xxx_space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate(time) M;
  real CDP_minus_diacylglycerol(time) M;
  real Phosphatidylglycerophosphate(time) M;
  real sn_minus_Glycerol_space_3_minus_phosphate(time) M;
  real Phosphatidate(time) M;
  real Phosphatidylserine(time) M;
  real Phosphatidylethanolamine(time) M;
  real R02055(time) katal;
  extern real R02055.kf;
  extern real R02055.kb;
  real R01799(time) katal;
  extern real R01799.kf;
  extern real R01799.kb;
  real R00842(time) katal;
  extern real R00842.kf;
  extern real R00842.kb;
  real R00851(time) katal;
  extern real R00851.kf;
  extern real R00851.kb;
  real R01801(time) katal;
  extern real R01801.kf;
  extern real R01801.kb;
  real R01800(time) katal;
  extern real R01800.kf;
  extern real R01800.kb;
  real R02241(time) katal;
  extern real R02241.kf;
  extern real R02241.kb;

  // equations
  when (time=time.min) Glycerone_space_phosphate = 0;
  (Glycerone_space_phosphate*uVol):time = R00842;
  when (time=time.min) Acyl_minus_CoA = 0;
  (Acyl_minus_CoA*uVol):time = -1*R00851 + R02241;
  when (time=time.min) xxx_space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate = 0;
  (xxx_space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate*uVol):time = R00851 + R02241;
  when (time=time.min) CDP_minus_diacylglycerol = 0;
  (CDP_minus_diacylglycerol*uVol):time = R01799 + -1*R01801 + -1*R01800;
  when (time=time.min) Phosphatidylglycerophosphate = 0;
  (Phosphatidylglycerophosphate*uVol):time = R01801;
  when (time=time.min) sn_minus_Glycerol_space_3_minus_phosphate = 0;
  (sn_minus_Glycerol_space_3_minus_phosphate*uVol):time = -1*R00842 + -1*R00851;
  when (time=time.min) Phosphatidate = 0;
  (Phosphatidate*uVol):time = -1*R01799 + -1*R02241;
  when (time=time.min) Phosphatidylserine = 0;
  (Phosphatidylserine*uVol):time = -1*R02055 + R01800;
  when (time=time.min) Phosphatidylethanolamine = 0;
  (Phosphatidylethanolamine*uVol):time = R02055;
  R02055 = R02055.kf*Phosphatidylserine - R02055.kb*Phosphatidylethanolamine;
  R01799 = R01799.kf*Phosphatidate - R01799.kb*CDP_minus_diacylglycerol;
  R00842 = R00842.kf*sn_minus_Glycerol_space_3_minus_phosphate - R00842.kb*Glycerone_space_phosphate;
  R00851 = R00851.kf*sn_minus_Glycerol_space_3_minus_phosphate*Acyl_minus_CoA - R00851.kb*_space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate;
  R01801 = R01801.kf*CDP_minus_diacylglycerol - R01801.kb*Phosphatidylglycerophosphate;
  R01800 = R01800.kf*CDP_minus_diacylglycerol - R01800.kb*Phosphatidylserine;
  R02241 = R02241.kf*Phosphatidate - R02241.kb*_space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate*Acyl_minus_CoA;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E1_space_1_space_1_space_94.sbmlRole="species";
  E1_space_1_space_1_space_94.sbmlCompartment="uVol";
  E2_space_3_space_1_space_15.sbmlRole="species";
  E2_space_3_space_1_space_15.sbmlCompartment="uVol";
  E2_space_3_space_1_space_51.sbmlRole="species";
  E2_space_3_space_1_space_51.sbmlCompartment="uVol";
  E2_space_7_space_8_space_5.sbmlRole="species";
  E2_space_7_space_8_space_5.sbmlCompartment="uVol";
  E2_space_7_space_7_space_41.sbmlRole="species";
  E2_space_7_space_7_space_41.sbmlCompartment="uVol";
  E2_space_7_space_8_space_8.sbmlRole="species";
  E2_space_7_space_8_space_8.sbmlCompartment="uVol";
  E4_space_1_space_1_space_65.sbmlRole="species";
  E4_space_1_space_1_space_65.sbmlCompartment="uVol";
  Glycerone_space_phosphate.sbmlRole="species";
  Glycerone_space_phosphate.sbmlCompartment="uVol";
  Acyl_minus_CoA.sbmlRole="species";
  Acyl_minus_CoA.sbmlCompartment="uVol";
  xxx_space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate.sbmlRole="species";
  xxx_space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate.sbmlName="_space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate";
  xxx_space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate.sbmlCompartment="uVol";
  CDP_minus_diacylglycerol.sbmlRole="species";
  CDP_minus_diacylglycerol.sbmlCompartment="uVol";
  Phosphatidylglycerophosphate.sbmlRole="species";
  Phosphatidylglycerophosphate.sbmlCompartment="uVol";
  sn_minus_Glycerol_space_3_minus_phosphate.sbmlRole="species";
  sn_minus_Glycerol_space_3_minus_phosphate.sbmlCompartment="uVol";
  Phosphatidate.sbmlRole="species";
  Phosphatidate.sbmlCompartment="uVol";
  Phosphatidylserine.sbmlRole="species";
  Phosphatidylserine.sbmlCompartment="uVol";
  Phosphatidylethanolamine.sbmlRole="species";
  Phosphatidylethanolamine.sbmlCompartment="uVol";
  R02055.sbmlRole="rate";
  R02055.kf.sbmlRole="rate";
  R02055.kb.sbmlRole="rate";
  R01799.sbmlRole="rate";
  R01799.kf.sbmlRole="rate";
  R01799.kb.sbmlRole="rate";
  R00842.sbmlRole="rate";
  R00842.kf.sbmlRole="rate";
  R00842.kb.sbmlRole="rate";
  R00851.sbmlRole="rate";
  R00851.kf.sbmlRole="rate";
  R00851.kb.sbmlRole="rate";
  R01801.sbmlRole="rate";
  R01801.kf.sbmlRole="rate";
  R01801.kb.sbmlRole="rate";
  R01800.sbmlRole="rate";
  R01800.kf.sbmlRole="rate";
  R01800.kb.sbmlRole="rate";
  R02241.sbmlRole="rate";
  R02241.kf.sbmlRole="rate";
  R02241.kb.sbmlRole="rate";
}