// This model generated automatically from SBML
// WARNING: Renamed variable _space_S_space__minus_1_minus_Pyrroline_minus_5_minus_carboxylate to xxx_space_S_space__minus_1_minus_Pyrroline_minus_5_minus_carboxylate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R03291: trans_minus_4_minus_Hydroxy_minus_L_minus_proline <=> L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate 
// R01086: N_minus__space_L_minus_Arginino_space_succinate => Fumarate L_minus_Arginine 
// R03661: L_minus_Proline <=> L_minus_Prolyl_minus_tRNA_space_Pro_space_ 
// R01398: Carbamoyl_space_phosphate L_minus_Ornithine => L_minus_Citrulline 
// R01954: L_minus_Citrulline L_minus_Aspartate => N_minus__space_L_minus_Arginino_space_succinate 
// R00471: D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate => Pyruvate Glyoxylate 
// R03646: L_minus_Arginine => L_minus_Arginyl_minus_tRNA_space_Arg_space_ 
// R01248: L_minus_Proline => _space_S_space__minus_1_minus_Pyrroline_minus_5_minus_carboxylate 
// R05052: L_minus_erythro_minus_4_minus_Hydroxyglutamate <=> D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E4_space_1_space_1_space_3 = 0 M;
  real E2_space_6_space_1_space_1 = 0 M;
  real E2_space_1_space_3_space_3 = 0 M;
  real E6_space_1_space_1_space_15 = 0 M;
  real E6_space_3_space_4_space_5 = 0 M;
  real E1_space_5_space_1_space_2 = 0 M;
  real E4_space_3_space_2_space_1 = 0 M;
  real E6_space_1_space_1_space_19 = 0 M;
  real D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate(time) M;
  real Carbamoyl_space_phosphate(time) M;
  real L_minus_Prolyl_minus_tRNA_space_Pro_space_(time) M;
  real L_minus_Aspartate(time) M;
  real L_minus_erythro_minus_4_minus_Hydroxyglutamate(time) M;
  real L_minus_Citrulline(time) M;
  real L_minus_Ornithine(time) M;
  real xxx_space_S_space__minus_1_minus_Pyrroline_minus_5_minus_carboxylate(time) M;
  real L_minus_Proline(time) M;
  real trans_minus_4_minus_Hydroxy_minus_L_minus_proline(time) M;
  real L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate(time) M;
  real N_minus__space_L_minus_Arginino_space_succinate(time) M;
  real L_minus_Arginine(time) M;
  real Fumarate(time) M;
  real L_minus_Arginyl_minus_tRNA_space_Arg_space_(time) M;
  real Glyoxylate(time) M;
  real Pyruvate(time) M;
  real R03291(time) katal;
  extern real R03291.kf;
  extern real R03291.kb;
  real R01086(time) katal;
  extern real R01086.kf;
  extern real R01086.kb;
  real R03661(time) katal;
  extern real R03661.kf;
  extern real R03661.kb;
  real R01398(time) katal;
  extern real R01398.kf;
  extern real R01398.kb;
  real R01954(time) katal;
  extern real R01954.kf;
  extern real R01954.kb;
  real R00471(time) katal;
  extern real R00471.kf;
  extern real R00471.kb;
  real R03646(time) katal;
  extern real R03646.kf;
  extern real R03646.kb;
  real R01248(time) katal;
  extern real R01248.kf;
  extern real R01248.kb;
  real R05052(time) katal;
  extern real R05052.kf;
  extern real R05052.kb;

  // equations
  when (time=time.min) D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate = 0;
  (D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate*uVol):time = -1*R00471 + R05052;
  when (time=time.min) Carbamoyl_space_phosphate = 0;
  (Carbamoyl_space_phosphate*uVol):time = -1*R01398;
  when (time=time.min) L_minus_Prolyl_minus_tRNA_space_Pro_space_ = 0;
  (L_minus_Prolyl_minus_tRNA_space_Pro_space_*uVol):time = R03661;
  when (time=time.min) L_minus_Aspartate = 0;
  (L_minus_Aspartate*uVol):time = -1*R01954;
  when (time=time.min) L_minus_erythro_minus_4_minus_Hydroxyglutamate = 0;
  (L_minus_erythro_minus_4_minus_Hydroxyglutamate*uVol):time = -1*R05052;
  when (time=time.min) L_minus_Citrulline = 0;
  (L_minus_Citrulline*uVol):time = R01398 + -1*R01954;
  when (time=time.min) L_minus_Ornithine = 0;
  (L_minus_Ornithine*uVol):time = -1*R01398;
  when (time=time.min) xxx_space_S_space__minus_1_minus_Pyrroline_minus_5_minus_carboxylate = 0;
  (xxx_space_S_space__minus_1_minus_Pyrroline_minus_5_minus_carboxylate*uVol):time = R01248;
  when (time=time.min) L_minus_Proline = 0;
  (L_minus_Proline*uVol):time = -1*R03661 + -1*R01248;
  when (time=time.min) trans_minus_4_minus_Hydroxy_minus_L_minus_proline = 0;
  (trans_minus_4_minus_Hydroxy_minus_L_minus_proline*uVol):time = -1*R03291;
  when (time=time.min) L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate = 0;
  (L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate*uVol):time = R03291;
  when (time=time.min) N_minus__space_L_minus_Arginino_space_succinate = 0;
  (N_minus__space_L_minus_Arginino_space_succinate*uVol):time = -1*R01086 + R01954;
  when (time=time.min) L_minus_Arginine = 0;
  (L_minus_Arginine*uVol):time = R01086 + -1*R03646;
  when (time=time.min) Fumarate = 0;
  (Fumarate*uVol):time = R01086;
  when (time=time.min) L_minus_Arginyl_minus_tRNA_space_Arg_space_ = 0;
  (L_minus_Arginyl_minus_tRNA_space_Arg_space_*uVol):time = R03646;
  when (time=time.min) Glyoxylate = 0;
  (Glyoxylate*uVol):time = R00471;
  when (time=time.min) Pyruvate = 0;
  (Pyruvate*uVol):time = R00471;
  R03291 = R03291.kf*trans_minus_4_minus_Hydroxy_minus_L_minus_proline - R03291.kb*L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate;
  R01086 = R01086.kf*N_minus__space_L_minus_Arginino_space_succinate - R01086.kb*Fumarate*L_minus_Arginine;
  R03661 = R03661.kf*L_minus_Proline - R03661.kb*L_minus_Prolyl_minus_tRNA_space_Pro_space_;
  R01398 = R01398.kf*Carbamoyl_space_phosphate*L_minus_Ornithine - R01398.kb*L_minus_Citrulline;
  R01954 = R01954.kf*L_minus_Citrulline*L_minus_Aspartate - R01954.kb*N_minus__space_L_minus_Arginino_space_succinate;
  R00471 = R00471.kf*D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate - R00471.kb*Pyruvate*Glyoxylate;
  R03646 = R03646.kf*L_minus_Arginine - R03646.kb*L_minus_Arginyl_minus_tRNA_space_Arg_space_;
  R01248 = R01248.kf*L_minus_Proline - R01248.kb*_space_S_space__minus_1_minus_Pyrroline_minus_5_minus_carboxylate;
  R05052 = R05052.kf*L_minus_erythro_minus_4_minus_Hydroxyglutamate - R05052.kb*D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E4_space_1_space_1_space_3.sbmlRole="species";
  E4_space_1_space_1_space_3.sbmlCompartment="uVol";
  E2_space_6_space_1_space_1.sbmlRole="species";
  E2_space_6_space_1_space_1.sbmlCompartment="uVol";
  E2_space_1_space_3_space_3.sbmlRole="species";
  E2_space_1_space_3_space_3.sbmlCompartment="uVol";
  E6_space_1_space_1_space_15.sbmlRole="species";
  E6_space_1_space_1_space_15.sbmlCompartment="uVol";
  E6_space_3_space_4_space_5.sbmlRole="species";
  E6_space_3_space_4_space_5.sbmlCompartment="uVol";
  E1_space_5_space_1_space_2.sbmlRole="species";
  E1_space_5_space_1_space_2.sbmlCompartment="uVol";
  E4_space_3_space_2_space_1.sbmlRole="species";
  E4_space_3_space_2_space_1.sbmlCompartment="uVol";
  E6_space_1_space_1_space_19.sbmlRole="species";
  E6_space_1_space_1_space_19.sbmlCompartment="uVol";
  D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate.sbmlRole="species";
  D_minus_4_minus_Hydroxy_minus_2_minus_oxoglutarate.sbmlCompartment="uVol";
  Carbamoyl_space_phosphate.sbmlRole="species";
  Carbamoyl_space_phosphate.sbmlCompartment="uVol";
  L_minus_Prolyl_minus_tRNA_space_Pro_space_.sbmlRole="species";
  L_minus_Prolyl_minus_tRNA_space_Pro_space_.sbmlCompartment="uVol";
  L_minus_Aspartate.sbmlRole="species";
  L_minus_Aspartate.sbmlCompartment="uVol";
  L_minus_erythro_minus_4_minus_Hydroxyglutamate.sbmlRole="species";
  L_minus_erythro_minus_4_minus_Hydroxyglutamate.sbmlCompartment="uVol";
  L_minus_Citrulline.sbmlRole="species";
  L_minus_Citrulline.sbmlCompartment="uVol";
  L_minus_Ornithine.sbmlRole="species";
  L_minus_Ornithine.sbmlCompartment="uVol";
  xxx_space_S_space__minus_1_minus_Pyrroline_minus_5_minus_carboxylate.sbmlRole="species";
  xxx_space_S_space__minus_1_minus_Pyrroline_minus_5_minus_carboxylate.sbmlName="_space_S_space__minus_1_minus_Pyrroline_minus_5_minus_carboxylate";
  xxx_space_S_space__minus_1_minus_Pyrroline_minus_5_minus_carboxylate.sbmlCompartment="uVol";
  L_minus_Proline.sbmlRole="species";
  L_minus_Proline.sbmlCompartment="uVol";
  trans_minus_4_minus_Hydroxy_minus_L_minus_proline.sbmlRole="species";
  trans_minus_4_minus_Hydroxy_minus_L_minus_proline.sbmlCompartment="uVol";
  L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate.sbmlRole="species";
  L_minus_1_minus_Pyrroline_minus_3_minus_hydroxy_minus_5_minus_carboxylate.sbmlCompartment="uVol";
  N_minus__space_L_minus_Arginino_space_succinate.sbmlRole="species";
  N_minus__space_L_minus_Arginino_space_succinate.sbmlCompartment="uVol";
  L_minus_Arginine.sbmlRole="species";
  L_minus_Arginine.sbmlCompartment="uVol";
  Fumarate.sbmlRole="species";
  Fumarate.sbmlCompartment="uVol";
  L_minus_Arginyl_minus_tRNA_space_Arg_space_.sbmlRole="species";
  L_minus_Arginyl_minus_tRNA_space_Arg_space_.sbmlCompartment="uVol";
  Glyoxylate.sbmlRole="species";
  Glyoxylate.sbmlCompartment="uVol";
  Pyruvate.sbmlRole="species";
  Pyruvate.sbmlCompartment="uVol";
  R03291.sbmlRole="rate";
  R03291.kf.sbmlRole="rate";
  R03291.kb.sbmlRole="rate";
  R01086.sbmlRole="rate";
  R01086.kf.sbmlRole="rate";
  R01086.kb.sbmlRole="rate";
  R03661.sbmlRole="rate";
  R03661.kf.sbmlRole="rate";
  R03661.kb.sbmlRole="rate";
  R01398.sbmlRole="rate";
  R01398.kf.sbmlRole="rate";
  R01398.kb.sbmlRole="rate";
  R01954.sbmlRole="rate";
  R01954.kf.sbmlRole="rate";
  R01954.kb.sbmlRole="rate";
  R00471.sbmlRole="rate";
  R00471.kf.sbmlRole="rate";
  R00471.kb.sbmlRole="rate";
  R03646.sbmlRole="rate";
  R03646.kf.sbmlRole="rate";
  R03646.kb.sbmlRole="rate";
  R01248.sbmlRole="rate";
  R01248.kf.sbmlRole="rate";
  R01248.kb.sbmlRole="rate";
  R05052.sbmlRole="rate";
  R05052.kf.sbmlRole="rate";
  R05052.kb.sbmlRole="rate";
}