// This model generated automatically from SBML
// WARNING: Renamed variable _space_3_minus_Chloro_minus_cis_space_cis_minus_muconate to xxx_space_3_minus_Chloro_minus_cis_space_cis_minus_muconate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_space_4_space_6_minus_Trichlorophenol to xxx_space_2_space_4_space_6_minus_Trichlorophenol due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_space_6_minus_Dichlorohydroquinone to xxx_space_2_space_6_minus_Dichlorohydroquinone due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_space_6_minus_Dichlorophenol to xxx_space_2_space_6_minus_Dichlorophenol due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R05449: _space_2_space_4_space_6_minus_Trichlorophenol <=> _space_2_space_6_minus_Dichlorohydroquinone 
// R05390: _space_3_minus_Chloro_minus_cis_space_cis_minus_muconate <=> Protoanemonin 
// R05448: _space_2_space_6_minus_Dichlorophenol <=> _space_2_space_6_minus_Dichlorohydroquinone 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E5_space_5_space_1_space_1 = 0 M;
  real E1_space_14_space_13_space__minus_ = 0 M;
  real Protoanemonin(time) M;
  real xxx_space_3_minus_Chloro_minus_cis_space_cis_minus_muconate(time) M;
  real xxx_space_2_space_4_space_6_minus_Trichlorophenol(time) M;
  real xxx_space_2_space_6_minus_Dichlorohydroquinone(time) M;
  real xxx_space_2_space_6_minus_Dichlorophenol(time) M;
  real R05449(time) katal;
  extern real R05449.kf;
  extern real R05449.kb;
  real R05390(time) katal;
  extern real R05390.kf;
  extern real R05390.kb;
  real R05448(time) katal;
  extern real R05448.kf;
  extern real R05448.kb;

  // equations
  when (time=time.min) Protoanemonin = 0;
  (Protoanemonin*uVol):time = R05390;
  when (time=time.min) xxx_space_3_minus_Chloro_minus_cis_space_cis_minus_muconate = 0;
  (xxx_space_3_minus_Chloro_minus_cis_space_cis_minus_muconate*uVol):time = -1*R05390;
  when (time=time.min) xxx_space_2_space_4_space_6_minus_Trichlorophenol = 0;
  (xxx_space_2_space_4_space_6_minus_Trichlorophenol*uVol):time = -1*R05449;
  when (time=time.min) xxx_space_2_space_6_minus_Dichlorohydroquinone = 0;
  (xxx_space_2_space_6_minus_Dichlorohydroquinone*uVol):time = R05449 + R05448;
  when (time=time.min) xxx_space_2_space_6_minus_Dichlorophenol = 0;
  (xxx_space_2_space_6_minus_Dichlorophenol*uVol):time = -1*R05448;
  R05449 = R05449.kf*_space_2_space_4_space_6_minus_Trichlorophenol - R05449.kb*_space_2_space_6_minus_Dichlorohydroquinone;
  R05390 = R05390.kf*_space_3_minus_Chloro_minus_cis_space_cis_minus_muconate - R05390.kb*Protoanemonin;
  R05448 = R05448.kf*_space_2_space_6_minus_Dichlorophenol - R05448.kb*_space_2_space_6_minus_Dichlorohydroquinone;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E5_space_5_space_1_space_1.sbmlRole="species";
  E5_space_5_space_1_space_1.sbmlCompartment="uVol";
  E1_space_14_space_13_space__minus_.sbmlRole="species";
  E1_space_14_space_13_space__minus_.sbmlCompartment="uVol";
  Protoanemonin.sbmlRole="species";
  Protoanemonin.sbmlCompartment="uVol";
  xxx_space_3_minus_Chloro_minus_cis_space_cis_minus_muconate.sbmlRole="species";
  xxx_space_3_minus_Chloro_minus_cis_space_cis_minus_muconate.sbmlName="_space_3_minus_Chloro_minus_cis_space_cis_minus_muconate";
  xxx_space_3_minus_Chloro_minus_cis_space_cis_minus_muconate.sbmlCompartment="uVol";
  xxx_space_2_space_4_space_6_minus_Trichlorophenol.sbmlRole="species";
  xxx_space_2_space_4_space_6_minus_Trichlorophenol.sbmlName="_space_2_space_4_space_6_minus_Trichlorophenol";
  xxx_space_2_space_4_space_6_minus_Trichlorophenol.sbmlCompartment="uVol";
  xxx_space_2_space_6_minus_Dichlorohydroquinone.sbmlRole="species";
  xxx_space_2_space_6_minus_Dichlorohydroquinone.sbmlName="_space_2_space_6_minus_Dichlorohydroquinone";
  xxx_space_2_space_6_minus_Dichlorohydroquinone.sbmlCompartment="uVol";
  xxx_space_2_space_6_minus_Dichlorophenol.sbmlRole="species";
  xxx_space_2_space_6_minus_Dichlorophenol.sbmlName="_space_2_space_6_minus_Dichlorophenol";
  xxx_space_2_space_6_minus_Dichlorophenol.sbmlCompartment="uVol";
  R05449.sbmlRole="rate";
  R05449.kf.sbmlRole="rate";
  R05449.kb.sbmlRole="rate";
  R05390.sbmlRole="rate";
  R05390.kf.sbmlRole="rate";
  R05390.kb.sbmlRole="rate";
  R05448.sbmlRole="rate";
  R05448.kf.sbmlRole="rate";
  R05448.kb.sbmlRole="rate";
}