// This model generated automatically from SBML
// WARNING: Renamed variable _space_S_space__minus_Malate to xxx_space_S_space__minus_Malate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_Oxoglutarate to xxx_space_2_minus_Oxoglutarate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R00345: Oxaloacetate <=> Phosphoenolpyruvate CO2 
// R00408: Succinate <=> Fumarate 
// R01900: cis_minus_Aconitate <=> Isocitrate 
// R00396: L_minus_Alanine <=> Pyruvate 
// R00405: Succinate <=> Succinyl_minus_CoA 
// R00342: _space_S_space__minus_Malate <=> Oxaloacetate 
// R00199: Pyruvate <=> Phosphoenolpyruvate 
// R00267: Isocitrate <=> _space_2_minus_Oxoglutarate CO2 
// R01325: Citrate <=> cis_minus_Aconitate 
// R00235: Acetate <=> Acetyl_minus_CoA 
// R01082: _space_S_space__minus_Malate <=> Fumarate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E4_space_2_space_1_space_2 = 0 M;
  real E1_space_3_space_99_space_1 = 0 M;
  real E1_space_1_space_1_space_37 = 0 M;
  real E4_space_1_space_1_space_31 = 0 M;
  real E6_space_2_space_1_space_5 = 0 M;
  real E2_space_7_space_9_space_2 = 0 M;
  real E1_space_4_space_1_space_1 = 0 M;
  real E6_space_2_space_1_space_1 = 0 M;
  real E4_space_2_space_1_space_3 = 0 M;
  real E1_space_1_space_1_space_42 = 0 M;
  real Fumarate(time) M;
  real xxx_space_S_space__minus_Malate(time) M;
  real Succinate(time) M;
  real Oxaloacetate(time) M;
  real Pyruvate(time) M;
  real Acetyl_minus_CoA(time) M;
  real Phosphoenolpyruvate(time) M;
  real Succinyl_minus_CoA(time) M;
  real CO2(time) M;
  real Citrate(time) M;
  real L_minus_Alanine(time) M;
  real Acetate(time) M;
  real xxx_space_2_minus_Oxoglutarate(time) M;
  real cis_minus_Aconitate(time) M;
  real Isocitrate(time) M;
  real R00345(time) katal;
  extern real R00345.kf;
  extern real R00345.kb;
  real R00408(time) katal;
  extern real R00408.kf;
  extern real R00408.kb;
  real R01900(time) katal;
  extern real R01900.kf;
  extern real R01900.kb;
  real R00396(time) katal;
  extern real R00396.kf;
  extern real R00396.kb;
  real R00405(time) katal;
  extern real R00405.kf;
  extern real R00405.kb;
  real R00342(time) katal;
  extern real R00342.kf;
  extern real R00342.kb;
  real R00199(time) katal;
  extern real R00199.kf;
  extern real R00199.kb;
  real R00267(time) katal;
  extern real R00267.kf;
  extern real R00267.kb;
  real R01325(time) katal;
  extern real R01325.kf;
  extern real R01325.kb;
  real R00235(time) katal;
  extern real R00235.kf;
  extern real R00235.kb;
  real R01082(time) katal;
  extern real R01082.kf;
  extern real R01082.kb;

  // equations
  when (time=time.min) Fumarate = 0;
  (Fumarate*uVol):time = R00408 + R01082;
  when (time=time.min) xxx_space_S_space__minus_Malate = 0;
  (xxx_space_S_space__minus_Malate*uVol):time = -1*R00342 + -1*R01082;
  when (time=time.min) Succinate = 0;
  (Succinate*uVol):time = -1*R00408 + -1*R00405;
  when (time=time.min) Oxaloacetate = 0;
  (Oxaloacetate*uVol):time = -1*R00345 + R00342;
  when (time=time.min) Pyruvate = 0;
  (Pyruvate*uVol):time = R00396 + -1*R00199;
  when (time=time.min) Acetyl_minus_CoA = 0;
  (Acetyl_minus_CoA*uVol):time = R00235;
  when (time=time.min) Phosphoenolpyruvate = 0;
  (Phosphoenolpyruvate*uVol):time = R00345 + R00199;
  when (time=time.min) Succinyl_minus_CoA = 0;
  (Succinyl_minus_CoA*uVol):time = R00405;
  when (time=time.min) CO2 = 0;
  (CO2*uVol):time = R00345 + R00267;
  when (time=time.min) Citrate = 0;
  (Citrate*uVol):time = -1*R01325;
  when (time=time.min) L_minus_Alanine = 0;
  (L_minus_Alanine*uVol):time = -1*R00396;
  when (time=time.min) Acetate = 0;
  (Acetate*uVol):time = -1*R00235;
  when (time=time.min) xxx_space_2_minus_Oxoglutarate = 0;
  (xxx_space_2_minus_Oxoglutarate*uVol):time = R00267;
  when (time=time.min) cis_minus_Aconitate = 0;
  (cis_minus_Aconitate*uVol):time = -1*R01900 + R01325;
  when (time=time.min) Isocitrate = 0;
  (Isocitrate*uVol):time = R01900 + -1*R00267;
  R00345 = R00345.kf*Oxaloacetate - R00345.kb*Phosphoenolpyruvate*CO2;
  R00408 = R00408.kf*Succinate - R00408.kb*Fumarate;
  R01900 = R01900.kf*cis_minus_Aconitate - R01900.kb*Isocitrate;
  R00396 = R00396.kf*L_minus_Alanine - R00396.kb*Pyruvate;
  R00405 = R00405.kf*Succinate - R00405.kb*Succinyl_minus_CoA;
  R00342 = R00342.kf*_space_S_space__minus_Malate - R00342.kb*Oxaloacetate;
  R00199 = R00199.kf*Pyruvate - R00199.kb*Phosphoenolpyruvate;
  R00267 = R00267.kf*Isocitrate - R00267.kb*_space_2_minus_Oxoglutarate*CO2;
  R01325 = R01325.kf*Citrate - R01325.kb*cis_minus_Aconitate;
  R00235 = R00235.kf*Acetate - R00235.kb*Acetyl_minus_CoA;
  R01082 = R01082.kf*_space_S_space__minus_Malate - R01082.kb*Fumarate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E4_space_2_space_1_space_2.sbmlRole="species";
  E4_space_2_space_1_space_2.sbmlCompartment="uVol";
  E1_space_3_space_99_space_1.sbmlRole="species";
  E1_space_3_space_99_space_1.sbmlCompartment="uVol";
  E1_space_1_space_1_space_37.sbmlRole="species";
  E1_space_1_space_1_space_37.sbmlCompartment="uVol";
  E4_space_1_space_1_space_31.sbmlRole="species";
  E4_space_1_space_1_space_31.sbmlCompartment="uVol";
  E6_space_2_space_1_space_5.sbmlRole="species";
  E6_space_2_space_1_space_5.sbmlCompartment="uVol";
  E2_space_7_space_9_space_2.sbmlRole="species";
  E2_space_7_space_9_space_2.sbmlCompartment="uVol";
  E1_space_4_space_1_space_1.sbmlRole="species";
  E1_space_4_space_1_space_1.sbmlCompartment="uVol";
  E6_space_2_space_1_space_1.sbmlRole="species";
  E6_space_2_space_1_space_1.sbmlCompartment="uVol";
  E4_space_2_space_1_space_3.sbmlRole="species";
  E4_space_2_space_1_space_3.sbmlCompartment="uVol";
  E1_space_1_space_1_space_42.sbmlRole="species";
  E1_space_1_space_1_space_42.sbmlCompartment="uVol";
  Fumarate.sbmlRole="species";
  Fumarate.sbmlCompartment="uVol";
  xxx_space_S_space__minus_Malate.sbmlRole="species";
  xxx_space_S_space__minus_Malate.sbmlName="_space_S_space__minus_Malate";
  xxx_space_S_space__minus_Malate.sbmlCompartment="uVol";
  Succinate.sbmlRole="species";
  Succinate.sbmlCompartment="uVol";
  Oxaloacetate.sbmlRole="species";
  Oxaloacetate.sbmlCompartment="uVol";
  Pyruvate.sbmlRole="species";
  Pyruvate.sbmlCompartment="uVol";
  Acetyl_minus_CoA.sbmlRole="species";
  Acetyl_minus_CoA.sbmlCompartment="uVol";
  Phosphoenolpyruvate.sbmlRole="species";
  Phosphoenolpyruvate.sbmlCompartment="uVol";
  Succinyl_minus_CoA.sbmlRole="species";
  Succinyl_minus_CoA.sbmlCompartment="uVol";
  CO2.sbmlRole="species";
  CO2.sbmlCompartment="uVol";
  Citrate.sbmlRole="species";
  Citrate.sbmlCompartment="uVol";
  L_minus_Alanine.sbmlRole="species";
  L_minus_Alanine.sbmlCompartment="uVol";
  Acetate.sbmlRole="species";
  Acetate.sbmlCompartment="uVol";
  xxx_space_2_minus_Oxoglutarate.sbmlRole="species";
  xxx_space_2_minus_Oxoglutarate.sbmlName="_space_2_minus_Oxoglutarate";
  xxx_space_2_minus_Oxoglutarate.sbmlCompartment="uVol";
  cis_minus_Aconitate.sbmlRole="species";
  cis_minus_Aconitate.sbmlCompartment="uVol";
  Isocitrate.sbmlRole="species";
  Isocitrate.sbmlCompartment="uVol";
  R00345.sbmlRole="rate";
  R00345.kf.sbmlRole="rate";
  R00345.kb.sbmlRole="rate";
  R00408.sbmlRole="rate";
  R00408.kf.sbmlRole="rate";
  R00408.kb.sbmlRole="rate";
  R01900.sbmlRole="rate";
  R01900.kf.sbmlRole="rate";
  R01900.kb.sbmlRole="rate";
  R00396.sbmlRole="rate";
  R00396.kf.sbmlRole="rate";
  R00396.kb.sbmlRole="rate";
  R00405.sbmlRole="rate";
  R00405.kf.sbmlRole="rate";
  R00405.kb.sbmlRole="rate";
  R00342.sbmlRole="rate";
  R00342.kf.sbmlRole="rate";
  R00342.kb.sbmlRole="rate";
  R00199.sbmlRole="rate";
  R00199.kf.sbmlRole="rate";
  R00199.kb.sbmlRole="rate";
  R00267.sbmlRole="rate";
  R00267.kf.sbmlRole="rate";
  R00267.kb.sbmlRole="rate";
  R01325.sbmlRole="rate";
  R01325.kf.sbmlRole="rate";
  R01325.kb.sbmlRole="rate";
  R00235.sbmlRole="rate";
  R00235.kf.sbmlRole="rate";
  R00235.kb.sbmlRole="rate";
  R01082.sbmlRole="rate";
  R01082.kf.sbmlRole="rate";
  R01082.kb.sbmlRole="rate";
}