// This model generated automatically from SBML
// WARNING: Renamed variable _space_3_minus_Oxohexanoyl_minus_CoA to xxx_space_3_minus_Oxohexanoyl_minus_CoA due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_trans_minus_Dodecenoyl_minus_CoA to xxx_space_2_minus_trans_minus_Dodecenoyl_minus_CoA due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R01280: Hexadecanoic_space_acid => Palmitoyl_minus_CoA 
// R03777: Octanoyl_minus_CoA <=> trans_minus_Oct_minus_2_minus_enoyl_minus_CoA 
// R01177: Acetyl_minus_CoA => CoA _space_3_minus_Oxohexanoyl_minus_CoA 
// R00238: Acetyl_minus_CoA => Acetoacetyl_minus_CoA 
// R01175: Butanoyl_minus_CoA <=> Crotonoyl_minus_CoA 
// R03857: Lauroyl_minus_CoA <=> _space_2_minus_trans_minus_Dodecenoyl_minus_CoA 
// R01279: Palmitoyl_minus_CoA <=> trans_minus_Hexadec_minus_2_minus_enoyl_minus_CoA 
// R04751: Hexanoyl_minus_CoA <=> trans_minus_Hex_minus_2_minus_enoyl_minus_CoA 
// R03990: Tetradecanoyl_minus_CoA <=> trans_minus_Tetradec_minus_2_minus_enoyl_minus_CoA 
// R04754: Decanoyl_minus_CoA <=> trans_minus_Dec_minus_2_minus_enoyl_minus_CoA 
// R00623: Primary_space_alcohol => Aldehyde 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_3_space_1_space_9 = 0 M;
  real E1_space_3_space_99_space_3 = 0 M;
  real E1_space_1_space_1_space_1 = 0 M;
  real E6_space_2_space_1_space_3 = 0 M;
  real Acetoacetyl_minus_CoA(time) M;
  real Crotonoyl_minus_CoA(time) M;
  real Butanoyl_minus_CoA(time) M;
  real Primary_space_alcohol(time) M;
  real CoA(time) M;
  real xxx_space_3_minus_Oxohexanoyl_minus_CoA(time) M;
  real trans_minus_Hex_minus_2_minus_enoyl_minus_CoA(time) M;
  real Hexanoyl_minus_CoA(time) M;
  real Aldehyde(time) M;
  real trans_minus_Oct_minus_2_minus_enoyl_minus_CoA(time) M;
  real Octanoyl_minus_CoA(time) M;
  real Acetyl_minus_CoA(time) M;
  real trans_minus_Dec_minus_2_minus_enoyl_minus_CoA(time) M;
  real Decanoyl_minus_CoA(time) M;
  real xxx_space_2_minus_trans_minus_Dodecenoyl_minus_CoA(time) M;
  real Lauroyl_minus_CoA(time) M;
  real trans_minus_Tetradec_minus_2_minus_enoyl_minus_CoA(time) M;
  real Tetradecanoyl_minus_CoA(time) M;
  real trans_minus_Hexadec_minus_2_minus_enoyl_minus_CoA(time) M;
  real Palmitoyl_minus_CoA(time) M;
  real Hexadecanoic_space_acid(time) M;
  real R01280(time) katal;
  extern real R01280.kf;
  extern real R01280.kb;
  real R03777(time) katal;
  extern real R03777.kf;
  extern real R03777.kb;
  real R01177(time) katal;
  extern real R01177.kf;
  extern real R01177.kb;
  real R00238(time) katal;
  extern real R00238.kf;
  extern real R00238.kb;
  real R01175(time) katal;
  extern real R01175.kf;
  extern real R01175.kb;
  real R03857(time) katal;
  extern real R03857.kf;
  extern real R03857.kb;
  real R01279(time) katal;
  extern real R01279.kf;
  extern real R01279.kb;
  real R04751(time) katal;
  extern real R04751.kf;
  extern real R04751.kb;
  real R03990(time) katal;
  extern real R03990.kf;
  extern real R03990.kb;
  real R04754(time) katal;
  extern real R04754.kf;
  extern real R04754.kb;
  real R00623(time) katal;
  extern real R00623.kf;
  extern real R00623.kb;

  // equations
  when (time=time.min) Acetoacetyl_minus_CoA = 0;
  (Acetoacetyl_minus_CoA*uVol):time = R00238;
  when (time=time.min) Crotonoyl_minus_CoA = 0;
  (Crotonoyl_minus_CoA*uVol):time = R01175;
  when (time=time.min) Butanoyl_minus_CoA = 0;
  (Butanoyl_minus_CoA*uVol):time = -1*R01175;
  when (time=time.min) Primary_space_alcohol = 0;
  (Primary_space_alcohol*uVol):time = -1*R00623;
  when (time=time.min) CoA = 0;
  (CoA*uVol):time = R01177;
  when (time=time.min) xxx_space_3_minus_Oxohexanoyl_minus_CoA = 0;
  (xxx_space_3_minus_Oxohexanoyl_minus_CoA*uVol):time = R01177;
  when (time=time.min) trans_minus_Hex_minus_2_minus_enoyl_minus_CoA = 0;
  (trans_minus_Hex_minus_2_minus_enoyl_minus_CoA*uVol):time = R04751;
  when (time=time.min) Hexanoyl_minus_CoA = 0;
  (Hexanoyl_minus_CoA*uVol):time = -1*R04751;
  when (time=time.min) Aldehyde = 0;
  (Aldehyde*uVol):time = R00623;
  when (time=time.min) trans_minus_Oct_minus_2_minus_enoyl_minus_CoA = 0;
  (trans_minus_Oct_minus_2_minus_enoyl_minus_CoA*uVol):time = R03777;
  when (time=time.min) Octanoyl_minus_CoA = 0;
  (Octanoyl_minus_CoA*uVol):time = -1*R03777;
  when (time=time.min) Acetyl_minus_CoA = 0;
  (Acetyl_minus_CoA*uVol):time = -1*R01177 + -1*R00238;
  when (time=time.min) trans_minus_Dec_minus_2_minus_enoyl_minus_CoA = 0;
  (trans_minus_Dec_minus_2_minus_enoyl_minus_CoA*uVol):time = R04754;
  when (time=time.min) Decanoyl_minus_CoA = 0;
  (Decanoyl_minus_CoA*uVol):time = -1*R04754;
  when (time=time.min) xxx_space_2_minus_trans_minus_Dodecenoyl_minus_CoA = 0;
  (xxx_space_2_minus_trans_minus_Dodecenoyl_minus_CoA*uVol):time = R03857;
  when (time=time.min) Lauroyl_minus_CoA = 0;
  (Lauroyl_minus_CoA*uVol):time = -1*R03857;
  when (time=time.min) trans_minus_Tetradec_minus_2_minus_enoyl_minus_CoA = 0;
  (trans_minus_Tetradec_minus_2_minus_enoyl_minus_CoA*uVol):time = R03990;
  when (time=time.min) Tetradecanoyl_minus_CoA = 0;
  (Tetradecanoyl_minus_CoA*uVol):time = -1*R03990;
  when (time=time.min) trans_minus_Hexadec_minus_2_minus_enoyl_minus_CoA = 0;
  (trans_minus_Hexadec_minus_2_minus_enoyl_minus_CoA*uVol):time = R01279;
  when (time=time.min) Palmitoyl_minus_CoA = 0;
  (Palmitoyl_minus_CoA*uVol):time = R01280 + -1*R01279;
  when (time=time.min) Hexadecanoic_space_acid = 0;
  (Hexadecanoic_space_acid*uVol):time = -1*R01280;
  R01280 = R01280.kf*Hexadecanoic_space_acid - R01280.kb*Palmitoyl_minus_CoA;
  R03777 = R03777.kf*Octanoyl_minus_CoA - R03777.kb*trans_minus_Oct_minus_2_minus_enoyl_minus_CoA;
  R01177 = R01177.kf*Acetyl_minus_CoA - R01177.kb*CoA*_space_3_minus_Oxohexanoyl_minus_CoA;
  R00238 = R00238.kf*Acetyl_minus_CoA - R00238.kb*Acetoacetyl_minus_CoA;
  R01175 = R01175.kf*Butanoyl_minus_CoA - R01175.kb*Crotonoyl_minus_CoA;
  R03857 = R03857.kf*Lauroyl_minus_CoA - R03857.kb*_space_2_minus_trans_minus_Dodecenoyl_minus_CoA;
  R01279 = R01279.kf*Palmitoyl_minus_CoA - R01279.kb*trans_minus_Hexadec_minus_2_minus_enoyl_minus_CoA;
  R04751 = R04751.kf*Hexanoyl_minus_CoA - R04751.kb*trans_minus_Hex_minus_2_minus_enoyl_minus_CoA;
  R03990 = R03990.kf*Tetradecanoyl_minus_CoA - R03990.kb*trans_minus_Tetradec_minus_2_minus_enoyl_minus_CoA;
  R04754 = R04754.kf*Decanoyl_minus_CoA - R04754.kb*trans_minus_Dec_minus_2_minus_enoyl_minus_CoA;
  R00623 = R00623.kf*Primary_space_alcohol - R00623.kb*Aldehyde;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_3_space_1_space_9.sbmlRole="species";
  E2_space_3_space_1_space_9.sbmlCompartment="uVol";
  E1_space_3_space_99_space_3.sbmlRole="species";
  E1_space_3_space_99_space_3.sbmlCompartment="uVol";
  E1_space_1_space_1_space_1.sbmlRole="species";
  E1_space_1_space_1_space_1.sbmlCompartment="uVol";
  E6_space_2_space_1_space_3.sbmlRole="species";
  E6_space_2_space_1_space_3.sbmlCompartment="uVol";
  Acetoacetyl_minus_CoA.sbmlRole="species";
  Acetoacetyl_minus_CoA.sbmlCompartment="uVol";
  Crotonoyl_minus_CoA.sbmlRole="species";
  Crotonoyl_minus_CoA.sbmlCompartment="uVol";
  Butanoyl_minus_CoA.sbmlRole="species";
  Butanoyl_minus_CoA.sbmlCompartment="uVol";
  Primary_space_alcohol.sbmlRole="species";
  Primary_space_alcohol.sbmlCompartment="uVol";
  CoA.sbmlRole="species";
  CoA.sbmlCompartment="uVol";
  xxx_space_3_minus_Oxohexanoyl_minus_CoA.sbmlRole="species";
  xxx_space_3_minus_Oxohexanoyl_minus_CoA.sbmlName="_space_3_minus_Oxohexanoyl_minus_CoA";
  xxx_space_3_minus_Oxohexanoyl_minus_CoA.sbmlCompartment="uVol";
  trans_minus_Hex_minus_2_minus_enoyl_minus_CoA.sbmlRole="species";
  trans_minus_Hex_minus_2_minus_enoyl_minus_CoA.sbmlCompartment="uVol";
  Hexanoyl_minus_CoA.sbmlRole="species";
  Hexanoyl_minus_CoA.sbmlCompartment="uVol";
  Aldehyde.sbmlRole="species";
  Aldehyde.sbmlCompartment="uVol";
  trans_minus_Oct_minus_2_minus_enoyl_minus_CoA.sbmlRole="species";
  trans_minus_Oct_minus_2_minus_enoyl_minus_CoA.sbmlCompartment="uVol";
  Octanoyl_minus_CoA.sbmlRole="species";
  Octanoyl_minus_CoA.sbmlCompartment="uVol";
  Acetyl_minus_CoA.sbmlRole="species";
  Acetyl_minus_CoA.sbmlCompartment="uVol";
  trans_minus_Dec_minus_2_minus_enoyl_minus_CoA.sbmlRole="species";
  trans_minus_Dec_minus_2_minus_enoyl_minus_CoA.sbmlCompartment="uVol";
  Decanoyl_minus_CoA.sbmlRole="species";
  Decanoyl_minus_CoA.sbmlCompartment="uVol";
  xxx_space_2_minus_trans_minus_Dodecenoyl_minus_CoA.sbmlRole="species";
  xxx_space_2_minus_trans_minus_Dodecenoyl_minus_CoA.sbmlName="_space_2_minus_trans_minus_Dodecenoyl_minus_CoA";
  xxx_space_2_minus_trans_minus_Dodecenoyl_minus_CoA.sbmlCompartment="uVol";
  Lauroyl_minus_CoA.sbmlRole="species";
  Lauroyl_minus_CoA.sbmlCompartment="uVol";
  trans_minus_Tetradec_minus_2_minus_enoyl_minus_CoA.sbmlRole="species";
  trans_minus_Tetradec_minus_2_minus_enoyl_minus_CoA.sbmlCompartment="uVol";
  Tetradecanoyl_minus_CoA.sbmlRole="species";
  Tetradecanoyl_minus_CoA.sbmlCompartment="uVol";
  trans_minus_Hexadec_minus_2_minus_enoyl_minus_CoA.sbmlRole="species";
  trans_minus_Hexadec_minus_2_minus_enoyl_minus_CoA.sbmlCompartment="uVol";
  Palmitoyl_minus_CoA.sbmlRole="species";
  Palmitoyl_minus_CoA.sbmlCompartment="uVol";
  Hexadecanoic_space_acid.sbmlRole="species";
  Hexadecanoic_space_acid.sbmlCompartment="uVol";
  R01280.sbmlRole="rate";
  R01280.kf.sbmlRole="rate";
  R01280.kb.sbmlRole="rate";
  R03777.sbmlRole="rate";
  R03777.kf.sbmlRole="rate";
  R03777.kb.sbmlRole="rate";
  R01177.sbmlRole="rate";
  R01177.kf.sbmlRole="rate";
  R01177.kb.sbmlRole="rate";
  R00238.sbmlRole="rate";
  R00238.kf.sbmlRole="rate";
  R00238.kb.sbmlRole="rate";
  R01175.sbmlRole="rate";
  R01175.kf.sbmlRole="rate";
  R01175.kb.sbmlRole="rate";
  R03857.sbmlRole="rate";
  R03857.kf.sbmlRole="rate";
  R03857.kb.sbmlRole="rate";
  R01279.sbmlRole="rate";
  R01279.kf.sbmlRole="rate";
  R01279.kb.sbmlRole="rate";
  R04751.sbmlRole="rate";
  R04751.kf.sbmlRole="rate";
  R04751.kb.sbmlRole="rate";
  R03990.sbmlRole="rate";
  R03990.kf.sbmlRole="rate";
  R03990.kb.sbmlRole="rate";
  R04754.sbmlRole="rate";
  R04754.kf.sbmlRole="rate";
  R04754.kb.sbmlRole="rate";
  R00623.sbmlRole="rate";
  R00623.kf.sbmlRole="rate";
  R00623.kb.sbmlRole="rate";
}