// This model generated automatically from SBML
// WARNING: Renamed variable _space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate to xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate due to JSim namespace restrictions
// WARNING: Renamed variable _space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_ to xxx_space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_ due to JSim namespace restrictions
// WARNING: Renamed variable _beta__minus_Alanine to xxx_beta__minus_Alanine due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus_Oxopropanoate to xxx_space_3_minus_Oxopropanoate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R05577: L_minus_Aspartate <=> L_minus_Aspartyl_minus_tRNA_space_Asp_space_ 
// R01954: L_minus_Aspartate => N_minus__space_L_minus_Arginino_space_succinate 
// R01397: L_minus_Aspartate <=> N_minus_Carbamoyl_minus_L_minus_aspartate 
// R01086: N_minus__space_L_minus_Arginino_space_succinate => Fumarate 
// R02569: Acetyl_minus_CoA Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine => _space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_ 
// R00357: L_minus_Aspartate <=> Oxaloacetate 
// R00014: Pyruvate Thiamin_space_diphosphate <=> _space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate 
// R00401: L_minus_Alanine => D_minus_Alanine 
// R00578: L_minus_Aspartate => L_minus_Asparagine 
// R01135: L_minus_Aspartate => N6_minus__space_1_space_2_minus_Dicarboxyethyl_space__minus_AMP 
// R03038: L_minus_Alanine => L_minus_Alanyl_minus_tRNA 
// R00355: L_minus_Aspartate => Oxaloacetate 
// R07618: Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine => Enzyme_space_N6_minus__space_lipoyl_space_lysine 
// R00489: L_minus_Aspartate <=> _beta__minus_Alanine 
// R04212: L_minus_Aspartyl_minus_tRNA_space_Asn_space_ <=> L_minus_Asparaginyl_minus_tRNA_space_Asn_space_ 
// R00344: Pyruvate => Oxaloacetate 
// R01083: N6_minus__space_1_space_2_minus_Dicarboxyethyl_space__minus_AMP => Fumarate 
// R00908: _beta__minus_Alanine => _space_3_minus_Oxopropanoate 
// R03270: _space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate Enzyme_space_N6_minus__space_lipoyl_space_lysine <=> _space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_ Thiamin_space_diphosphate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E6_space_4_space_1_space_1 = 0 M;
  real E1_space_8_space_1_space_4 = 0 M;
  real E1_space_2_space_4_space_1 = 0 M;
  real E2_space_3_space_1_space_12 = 0 M;
  real E1_space_4_space_3_space_16 = 0 M;
  real E2_space_6_space_1_space_1 = 0 M;
  real E2_space_6_space_1_space_19 = 0 M;
  real E2_space_1_space_3_space_2 = 0 M;
  real E4_space_1_space_1_space_11 = 0 M;
  real E6_space_1_space_1_space_12 = 0 M;
  real E5_space_1_space_1_space_1 = 0 M;
  real E6_space_1_space_1_space_7 = 0 M;
  real E6_space_3_space_5_space_7 = 0 M;
  real E6_space_3_space_5_space_4 = 0 M;
  real E6_space_3_space_4_space_4 = 0 M;
  real E6_space_3_space_4_space_5 = 0 M;
  real E4_space_3_space_2_space_1 = 0 M;
  real E4_space_3_space_2_space_2 = 0 M;
  real Enzyme_space_N6_minus__space_lipoyl_space_lysine(time) M;
  real Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine(time) M;
  real Oxaloacetate(time) M;
  real xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate(time) M;
  real xxx_space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_(time) M;
  real Thiamin_space_diphosphate(time) M;
  real Pyruvate(time) M;
  real Acetyl_minus_CoA(time) M;
  real N_minus_Carbamoyl_minus_L_minus_aspartate(time) M;
  real xxx_beta__minus_Alanine(time) M;
  real xxx_space_3_minus_Oxopropanoate(time) M;
  real L_minus_Aspartyl_minus_tRNA_space_Asp_space_(time) M;
  real L_minus_Alanine(time) M;
  real L_minus_Aspartate(time) M;
  real L_minus_Asparagine(time) M;
  real L_minus_Asparaginyl_minus_tRNA_space_Asn_space_(time) M;
  real L_minus_Aspartyl_minus_tRNA_space_Asn_space_(time) M;
  real Fumarate(time) M;
  real L_minus_Alanyl_minus_tRNA(time) M;
  real D_minus_Alanine(time) M;
  real N_minus__space_L_minus_Arginino_space_succinate(time) M;
  real N6_minus__space_1_space_2_minus_Dicarboxyethyl_space__minus_AMP(time) M;
  real R05577(time) katal;
  extern real R05577.kf;
  extern real R05577.kb;
  real R01954(time) katal;
  extern real R01954.kf;
  extern real R01954.kb;
  real R01397(time) katal;
  extern real R01397.kf;
  extern real R01397.kb;
  real R01086(time) katal;
  extern real R01086.kf;
  extern real R01086.kb;
  real R02569(time) katal;
  extern real R02569.kf;
  extern real R02569.kb;
  real R00357(time) katal;
  extern real R00357.kf;
  extern real R00357.kb;
  real R00014(time) katal;
  extern real R00014.kf;
  extern real R00014.kb;
  real R00401(time) katal;
  extern real R00401.kf;
  extern real R00401.kb;
  real R00578(time) katal;
  extern real R00578.kf;
  extern real R00578.kb;
  real R01135(time) katal;
  extern real R01135.kf;
  extern real R01135.kb;
  real R03038(time) katal;
  extern real R03038.kf;
  extern real R03038.kb;
  real R00355(time) katal;
  extern real R00355.kf;
  extern real R00355.kb;
  real R07618(time) katal;
  extern real R07618.kf;
  extern real R07618.kb;
  real R00489(time) katal;
  extern real R00489.kf;
  extern real R00489.kb;
  real R04212(time) katal;
  extern real R04212.kf;
  extern real R04212.kb;
  real R00344(time) katal;
  extern real R00344.kf;
  extern real R00344.kb;
  real R01083(time) katal;
  extern real R01083.kf;
  extern real R01083.kb;
  real R00908(time) katal;
  extern real R00908.kf;
  extern real R00908.kb;
  real R03270(time) katal;
  extern real R03270.kf;
  extern real R03270.kb;

  // equations
  when (time=time.min) Enzyme_space_N6_minus__space_lipoyl_space_lysine = 0;
  (Enzyme_space_N6_minus__space_lipoyl_space_lysine*uVol):time = R07618 + -1*R03270;
  when (time=time.min) Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine = 0;
  (Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine*uVol):time = -1*R02569 + -1*R07618;
  when (time=time.min) Oxaloacetate = 0;
  (Oxaloacetate*uVol):time = R00357 + R00355 + R00344;
  when (time=time.min) xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate = 0;
  (xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate*uVol):time = R00014 + -1*R03270;
  when (time=time.min) xxx_space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_ = 0;
  (xxx_space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_*uVol):time = R02569 + R03270;
  when (time=time.min) Thiamin_space_diphosphate = 0;
  (Thiamin_space_diphosphate*uVol):time = -1*R00014 + R03270;
  when (time=time.min) Pyruvate = 0;
  (Pyruvate*uVol):time = -1*R00014 + -1*R00344;
  when (time=time.min) Acetyl_minus_CoA = 0;
  (Acetyl_minus_CoA*uVol):time = -1*R02569;
  when (time=time.min) N_minus_Carbamoyl_minus_L_minus_aspartate = 0;
  (N_minus_Carbamoyl_minus_L_minus_aspartate*uVol):time = R01397;
  when (time=time.min) xxx_beta__minus_Alanine = 0;
  (xxx_beta__minus_Alanine*uVol):time = R00489 + -1*R00908;
  when (time=time.min) xxx_space_3_minus_Oxopropanoate = 0;
  (xxx_space_3_minus_Oxopropanoate*uVol):time = R00908;
  when (time=time.min) L_minus_Aspartyl_minus_tRNA_space_Asp_space_ = 0;
  (L_minus_Aspartyl_minus_tRNA_space_Asp_space_*uVol):time = R05577;
  when (time=time.min) L_minus_Alanine = 0;
  (L_minus_Alanine*uVol):time = -1*R00401 + -1*R03038;
  when (time=time.min) L_minus_Aspartate = 0;
  (L_minus_Aspartate*uVol):time = -1*R05577 + -1*R01954 + -1*R01397 + -1*R00357 + -1*R00578 + -1*R01135 + -1*R00355 + -1*R00489;
  when (time=time.min) L_minus_Asparagine = 0;
  (L_minus_Asparagine*uVol):time = R00578;
  when (time=time.min) L_minus_Asparaginyl_minus_tRNA_space_Asn_space_ = 0;
  (L_minus_Asparaginyl_minus_tRNA_space_Asn_space_*uVol):time = R04212;
  when (time=time.min) L_minus_Aspartyl_minus_tRNA_space_Asn_space_ = 0;
  (L_minus_Aspartyl_minus_tRNA_space_Asn_space_*uVol):time = -1*R04212;
  when (time=time.min) Fumarate = 0;
  (Fumarate*uVol):time = R01086 + R01083;
  when (time=time.min) L_minus_Alanyl_minus_tRNA = 0;
  (L_minus_Alanyl_minus_tRNA*uVol):time = R03038;
  when (time=time.min) D_minus_Alanine = 0;
  (D_minus_Alanine*uVol):time = R00401;
  when (time=time.min) N_minus__space_L_minus_Arginino_space_succinate = 0;
  (N_minus__space_L_minus_Arginino_space_succinate*uVol):time = R01954 + -1*R01086;
  when (time=time.min) N6_minus__space_1_space_2_minus_Dicarboxyethyl_space__minus_AMP = 0;
  (N6_minus__space_1_space_2_minus_Dicarboxyethyl_space__minus_AMP*uVol):time = R01135 + -1*R01083;
  R05577 = R05577.kf*L_minus_Aspartate - R05577.kb*L_minus_Aspartyl_minus_tRNA_space_Asp_space_;
  R01954 = R01954.kf*L_minus_Aspartate - R01954.kb*N_minus__space_L_minus_Arginino_space_succinate;
  R01397 = R01397.kf*L_minus_Aspartate - R01397.kb*N_minus_Carbamoyl_minus_L_minus_aspartate;
  R01086 = R01086.kf*N_minus__space_L_minus_Arginino_space_succinate - R01086.kb*Fumarate;
  R02569 = R02569.kf*Acetyl_minus_CoA*Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine - R02569.kb*_space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_;
  R00357 = R00357.kf*L_minus_Aspartate - R00357.kb*Oxaloacetate;
  R00014 = R00014.kf*Pyruvate*Thiamin_space_diphosphate - R00014.kb*_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate;
  R00401 = R00401.kf*L_minus_Alanine - R00401.kb*D_minus_Alanine;
  R00578 = R00578.kf*L_minus_Aspartate - R00578.kb*L_minus_Asparagine;
  R01135 = R01135.kf*L_minus_Aspartate - R01135.kb*N6_minus__space_1_space_2_minus_Dicarboxyethyl_space__minus_AMP;
  R03038 = R03038.kf*L_minus_Alanine - R03038.kb*L_minus_Alanyl_minus_tRNA;
  R00355 = R00355.kf*L_minus_Aspartate - R00355.kb*Oxaloacetate;
  R07618 = R07618.kf*Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine - R07618.kb*Enzyme_space_N6_minus__space_lipoyl_space_lysine;
  R00489 = R00489.kf*L_minus_Aspartate - R00489.kb*_beta__minus_Alanine;
  R04212 = R04212.kf*L_minus_Aspartyl_minus_tRNA_space_Asn_space_ - R04212.kb*L_minus_Asparaginyl_minus_tRNA_space_Asn_space_;
  R00344 = R00344.kf*Pyruvate - R00344.kb*Oxaloacetate;
  R01083 = R01083.kf*N6_minus__space_1_space_2_minus_Dicarboxyethyl_space__minus_AMP - R01083.kb*Fumarate;
  R00908 = R00908.kf*_beta__minus_Alanine - R00908.kb*_space_3_minus_Oxopropanoate;
  R03270 = R03270.kf*_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate*Enzyme_space_N6_minus__space_lipoyl_space_lysine - R03270.kb*_space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_*Thiamin_space_diphosphate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E6_space_4_space_1_space_1.sbmlRole="species";
  E6_space_4_space_1_space_1.sbmlCompartment="uVol";
  E1_space_8_space_1_space_4.sbmlRole="species";
  E1_space_8_space_1_space_4.sbmlCompartment="uVol";
  E1_space_2_space_4_space_1.sbmlRole="species";
  E1_space_2_space_4_space_1.sbmlCompartment="uVol";
  E2_space_3_space_1_space_12.sbmlRole="species";
  E2_space_3_space_1_space_12.sbmlCompartment="uVol";
  E1_space_4_space_3_space_16.sbmlRole="species";
  E1_space_4_space_3_space_16.sbmlCompartment="uVol";
  E2_space_6_space_1_space_1.sbmlRole="species";
  E2_space_6_space_1_space_1.sbmlCompartment="uVol";
  E2_space_6_space_1_space_19.sbmlRole="species";
  E2_space_6_space_1_space_19.sbmlCompartment="uVol";
  E2_space_1_space_3_space_2.sbmlRole="species";
  E2_space_1_space_3_space_2.sbmlCompartment="uVol";
  E4_space_1_space_1_space_11.sbmlRole="species";
  E4_space_1_space_1_space_11.sbmlCompartment="uVol";
  E6_space_1_space_1_space_12.sbmlRole="species";
  E6_space_1_space_1_space_12.sbmlCompartment="uVol";
  E5_space_1_space_1_space_1.sbmlRole="species";
  E5_space_1_space_1_space_1.sbmlCompartment="uVol";
  E6_space_1_space_1_space_7.sbmlRole="species";
  E6_space_1_space_1_space_7.sbmlCompartment="uVol";
  E6_space_3_space_5_space_7.sbmlRole="species";
  E6_space_3_space_5_space_7.sbmlCompartment="uVol";
  E6_space_3_space_5_space_4.sbmlRole="species";
  E6_space_3_space_5_space_4.sbmlCompartment="uVol";
  E6_space_3_space_4_space_4.sbmlRole="species";
  E6_space_3_space_4_space_4.sbmlCompartment="uVol";
  E6_space_3_space_4_space_5.sbmlRole="species";
  E6_space_3_space_4_space_5.sbmlCompartment="uVol";
  E4_space_3_space_2_space_1.sbmlRole="species";
  E4_space_3_space_2_space_1.sbmlCompartment="uVol";
  E4_space_3_space_2_space_2.sbmlRole="species";
  E4_space_3_space_2_space_2.sbmlCompartment="uVol";
  Enzyme_space_N6_minus__space_lipoyl_space_lysine.sbmlRole="species";
  Enzyme_space_N6_minus__space_lipoyl_space_lysine.sbmlCompartment="uVol";
  Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine.sbmlRole="species";
  Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine.sbmlCompartment="uVol";
  Oxaloacetate.sbmlRole="species";
  Oxaloacetate.sbmlCompartment="uVol";
  xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate.sbmlRole="species";
  xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate.sbmlName="_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate";
  xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate.sbmlCompartment="uVol";
  xxx_space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_.sbmlRole="species";
  xxx_space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_.sbmlName="_space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_";
  xxx_space_Dihydrolipoyllysine_minus_residue_space_acetyltransferase_space_.sbmlCompartment="uVol";
  Thiamin_space_diphosphate.sbmlRole="species";
  Thiamin_space_diphosphate.sbmlCompartment="uVol";
  Pyruvate.sbmlRole="species";
  Pyruvate.sbmlCompartment="uVol";
  Acetyl_minus_CoA.sbmlRole="species";
  Acetyl_minus_CoA.sbmlCompartment="uVol";
  N_minus_Carbamoyl_minus_L_minus_aspartate.sbmlRole="species";
  N_minus_Carbamoyl_minus_L_minus_aspartate.sbmlCompartment="uVol";
  xxx_beta__minus_Alanine.sbmlRole="species";
  xxx_beta__minus_Alanine.sbmlName="_beta__minus_Alanine";
  xxx_beta__minus_Alanine.sbmlCompartment="uVol";
  xxx_space_3_minus_Oxopropanoate.sbmlRole="species";
  xxx_space_3_minus_Oxopropanoate.sbmlName="_space_3_minus_Oxopropanoate";
  xxx_space_3_minus_Oxopropanoate.sbmlCompartment="uVol";
  L_minus_Aspartyl_minus_tRNA_space_Asp_space_.sbmlRole="species";
  L_minus_Aspartyl_minus_tRNA_space_Asp_space_.sbmlCompartment="uVol";
  L_minus_Alanine.sbmlRole="species";
  L_minus_Alanine.sbmlCompartment="uVol";
  L_minus_Aspartate.sbmlRole="species";
  L_minus_Aspartate.sbmlCompartment="uVol";
  L_minus_Asparagine.sbmlRole="species";
  L_minus_Asparagine.sbmlCompartment="uVol";
  L_minus_Asparaginyl_minus_tRNA_space_Asn_space_.sbmlRole="species";
  L_minus_Asparaginyl_minus_tRNA_space_Asn_space_.sbmlCompartment="uVol";
  L_minus_Aspartyl_minus_tRNA_space_Asn_space_.sbmlRole="species";
  L_minus_Aspartyl_minus_tRNA_space_Asn_space_.sbmlCompartment="uVol";
  Fumarate.sbmlRole="species";
  Fumarate.sbmlCompartment="uVol";
  L_minus_Alanyl_minus_tRNA.sbmlRole="species";
  L_minus_Alanyl_minus_tRNA.sbmlCompartment="uVol";
  D_minus_Alanine.sbmlRole="species";
  D_minus_Alanine.sbmlCompartment="uVol";
  N_minus__space_L_minus_Arginino_space_succinate.sbmlRole="species";
  N_minus__space_L_minus_Arginino_space_succinate.sbmlCompartment="uVol";
  N6_minus__space_1_space_2_minus_Dicarboxyethyl_space__minus_AMP.sbmlRole="species";
  N6_minus__space_1_space_2_minus_Dicarboxyethyl_space__minus_AMP.sbmlCompartment="uVol";
  R05577.sbmlRole="rate";
  R05577.kf.sbmlRole="rate";
  R05577.kb.sbmlRole="rate";
  R01954.sbmlRole="rate";
  R01954.kf.sbmlRole="rate";
  R01954.kb.sbmlRole="rate";
  R01397.sbmlRole="rate";
  R01397.kf.sbmlRole="rate";
  R01397.kb.sbmlRole="rate";
  R01086.sbmlRole="rate";
  R01086.kf.sbmlRole="rate";
  R01086.kb.sbmlRole="rate";
  R02569.sbmlRole="rate";
  R02569.kf.sbmlRole="rate";
  R02569.kb.sbmlRole="rate";
  R00357.sbmlRole="rate";
  R00357.kf.sbmlRole="rate";
  R00357.kb.sbmlRole="rate";
  R00014.sbmlRole="rate";
  R00014.kf.sbmlRole="rate";
  R00014.kb.sbmlRole="rate";
  R00401.sbmlRole="rate";
  R00401.kf.sbmlRole="rate";
  R00401.kb.sbmlRole="rate";
  R00578.sbmlRole="rate";
  R00578.kf.sbmlRole="rate";
  R00578.kb.sbmlRole="rate";
  R01135.sbmlRole="rate";
  R01135.kf.sbmlRole="rate";
  R01135.kb.sbmlRole="rate";
  R03038.sbmlRole="rate";
  R03038.kf.sbmlRole="rate";
  R03038.kb.sbmlRole="rate";
  R00355.sbmlRole="rate";
  R00355.kf.sbmlRole="rate";
  R00355.kb.sbmlRole="rate";
  R07618.sbmlRole="rate";
  R07618.kf.sbmlRole="rate";
  R07618.kb.sbmlRole="rate";
  R00489.sbmlRole="rate";
  R00489.kf.sbmlRole="rate";
  R00489.kb.sbmlRole="rate";
  R04212.sbmlRole="rate";
  R04212.kf.sbmlRole="rate";
  R04212.kb.sbmlRole="rate";
  R00344.sbmlRole="rate";
  R00344.kf.sbmlRole="rate";
  R00344.kb.sbmlRole="rate";
  R01083.sbmlRole="rate";
  R01083.kf.sbmlRole="rate";
  R01083.kb.sbmlRole="rate";
  R00908.sbmlRole="rate";
  R00908.kf.sbmlRole="rate";
  R00908.kb.sbmlRole="rate";
  R03270.sbmlRole="rate";
  R03270.kf.sbmlRole="rate";
  R03270.kb.sbmlRole="rate";
}