// This model generated automatically from SBML
// WARNING: Renamed variable _space_3_space_4_minus_Dihydroxymandelaldehyde to xxx_space_3_space_4_minus_Dihydroxymandelaldehyde due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_space_4_minus_Dihydroxyphenylethyleneglycol to xxx_space_3_space_4_minus_Dihydroxyphenylethyleneglycol due to JSim namespace restrictions
// WARNING: Renamed variable _space_5_minus_Carboxymethyl_minus_2_minus_hydroxymuconate to xxx_space_5_minus_Carboxymethyl_minus_2_minus_hydroxymuconate due to JSim namespace restrictions
// WARNING: Renamed variable _space_5_minus_Carboxy_minus_2_minus_oxohept_minus_3_minus_enedioate to xxx_space_5_minus_Carboxy_minus_2_minus_oxohept_minus_3_minus_enedioate due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate to xxx_space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R00713: Succinate_space_semialdehyde <=> Succinate 
// R04880: _space_3_space_4_minus_Dihydroxyphenylethyleneglycol => _space_3_space_4_minus_Dihydroxymandelaldehyde 
// R04379: _space_5_minus_Carboxymethyl_minus_2_minus_hydroxymuconate <=> _space_5_minus_Carboxy_minus_2_minus_oxohept_minus_3_minus_enedioate 
// R00734: L_minus_Tyrosine => _space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E1_space_1_space_1_space_1 = 0 M;
  real E5_space_3_space_3_space_10 = 0 M;
  real E1_space_2_space_1_space_16 = 0 M;
  real E2_space_6_space_1_space_1 = 0 M;
  real E2_space_6_space_1_space_9 = 0 M;
  real xxx_space_3_space_4_minus_Dihydroxymandelaldehyde(time) M;
  real xxx_space_3_space_4_minus_Dihydroxyphenylethyleneglycol(time) M;
  real xxx_space_5_minus_Carboxymethyl_minus_2_minus_hydroxymuconate(time) M;
  real xxx_space_5_minus_Carboxy_minus_2_minus_oxohept_minus_3_minus_enedioate(time) M;
  real Succinate_space_semialdehyde(time) M;
  real Succinate(time) M;
  real xxx_space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate(time) M;
  real L_minus_Tyrosine(time) M;
  real R00713(time) katal;
  extern real R00713.kf;
  extern real R00713.kb;
  real R04880(time) katal;
  extern real R04880.kf;
  extern real R04880.kb;
  real R04379(time) katal;
  extern real R04379.kf;
  extern real R04379.kb;
  real R00734(time) katal;
  extern real R00734.kf;
  extern real R00734.kb;

  // equations
  when (time=time.min) xxx_space_3_space_4_minus_Dihydroxymandelaldehyde = 0;
  (xxx_space_3_space_4_minus_Dihydroxymandelaldehyde*uVol):time = R04880;
  when (time=time.min) xxx_space_3_space_4_minus_Dihydroxyphenylethyleneglycol = 0;
  (xxx_space_3_space_4_minus_Dihydroxyphenylethyleneglycol*uVol):time = -1*R04880;
  when (time=time.min) xxx_space_5_minus_Carboxymethyl_minus_2_minus_hydroxymuconate = 0;
  (xxx_space_5_minus_Carboxymethyl_minus_2_minus_hydroxymuconate*uVol):time = -1*R04379;
  when (time=time.min) xxx_space_5_minus_Carboxy_minus_2_minus_oxohept_minus_3_minus_enedioate = 0;
  (xxx_space_5_minus_Carboxy_minus_2_minus_oxohept_minus_3_minus_enedioate*uVol):time = R04379;
  when (time=time.min) Succinate_space_semialdehyde = 0;
  (Succinate_space_semialdehyde*uVol):time = -1*R00713;
  when (time=time.min) Succinate = 0;
  (Succinate*uVol):time = R00713;
  when (time=time.min) xxx_space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate = 0;
  (xxx_space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate*uVol):time = R00734;
  when (time=time.min) L_minus_Tyrosine = 0;
  (L_minus_Tyrosine*uVol):time = -1*R00734;
  R00713 = R00713.kf*Succinate_space_semialdehyde - R00713.kb*Succinate;
  R04880 = R04880.kf*_space_3_space_4_minus_Dihydroxyphenylethyleneglycol - R04880.kb*_space_3_space_4_minus_Dihydroxymandelaldehyde;
  R04379 = R04379.kf*_space_5_minus_Carboxymethyl_minus_2_minus_hydroxymuconate - R04379.kb*_space_5_minus_Carboxy_minus_2_minus_oxohept_minus_3_minus_enedioate;
  R00734 = R00734.kf*L_minus_Tyrosine - R00734.kb*_space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E1_space_1_space_1_space_1.sbmlRole="species";
  E1_space_1_space_1_space_1.sbmlCompartment="uVol";
  E5_space_3_space_3_space_10.sbmlRole="species";
  E5_space_3_space_3_space_10.sbmlCompartment="uVol";
  E1_space_2_space_1_space_16.sbmlRole="species";
  E1_space_2_space_1_space_16.sbmlCompartment="uVol";
  E2_space_6_space_1_space_1.sbmlRole="species";
  E2_space_6_space_1_space_1.sbmlCompartment="uVol";
  E2_space_6_space_1_space_9.sbmlRole="species";
  E2_space_6_space_1_space_9.sbmlCompartment="uVol";
  xxx_space_3_space_4_minus_Dihydroxymandelaldehyde.sbmlRole="species";
  xxx_space_3_space_4_minus_Dihydroxymandelaldehyde.sbmlName="_space_3_space_4_minus_Dihydroxymandelaldehyde";
  xxx_space_3_space_4_minus_Dihydroxymandelaldehyde.sbmlCompartment="uVol";
  xxx_space_3_space_4_minus_Dihydroxyphenylethyleneglycol.sbmlRole="species";
  xxx_space_3_space_4_minus_Dihydroxyphenylethyleneglycol.sbmlName="_space_3_space_4_minus_Dihydroxyphenylethyleneglycol";
  xxx_space_3_space_4_minus_Dihydroxyphenylethyleneglycol.sbmlCompartment="uVol";
  xxx_space_5_minus_Carboxymethyl_minus_2_minus_hydroxymuconate.sbmlRole="species";
  xxx_space_5_minus_Carboxymethyl_minus_2_minus_hydroxymuconate.sbmlName="_space_5_minus_Carboxymethyl_minus_2_minus_hydroxymuconate";
  xxx_space_5_minus_Carboxymethyl_minus_2_minus_hydroxymuconate.sbmlCompartment="uVol";
  xxx_space_5_minus_Carboxy_minus_2_minus_oxohept_minus_3_minus_enedioate.sbmlRole="species";
  xxx_space_5_minus_Carboxy_minus_2_minus_oxohept_minus_3_minus_enedioate.sbmlName="_space_5_minus_Carboxy_minus_2_minus_oxohept_minus_3_minus_enedioate";
  xxx_space_5_minus_Carboxy_minus_2_minus_oxohept_minus_3_minus_enedioate.sbmlCompartment="uVol";
  Succinate_space_semialdehyde.sbmlRole="species";
  Succinate_space_semialdehyde.sbmlCompartment="uVol";
  Succinate.sbmlRole="species";
  Succinate.sbmlCompartment="uVol";
  xxx_space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate.sbmlRole="species";
  xxx_space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate.sbmlName="_space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate";
  xxx_space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate.sbmlCompartment="uVol";
  L_minus_Tyrosine.sbmlRole="species";
  L_minus_Tyrosine.sbmlCompartment="uVol";
  R00713.sbmlRole="rate";
  R00713.kf.sbmlRole="rate";
  R00713.kb.sbmlRole="rate";
  R04880.sbmlRole="rate";
  R04880.kf.sbmlRole="rate";
  R04880.kb.sbmlRole="rate";
  R04379.sbmlRole="rate";
  R04379.kf.sbmlRole="rate";
  R04379.kb.sbmlRole="rate";
  R00734.sbmlRole="rate";
  R00734.kf.sbmlRole="rate";
  R00734.kb.sbmlRole="rate";
}