// This model generated automatically from SBML
// WARNING: Renamed variable _space_3_minus_Oxopropanoate to xxx_space_3_minus_Oxopropanoate due to JSim namespace restrictions
// WARNING: Renamed variable _beta__minus_Alanine to xxx_beta__minus_Alanine due to JSim namespace restrictions
// WARNING: Renamed variable _space_2S_space_3R_space__minus_3_minus_Hydroxybutane_minus_1_space_2_space_3_minus_tricarboxylate to xxx_space_2S_space_3R_space__minus_3_minus_Hydroxybutane_minus_1_space_2_space_3_minus_tricarboxylate due to JSim namespace restrictions
// WARNING: Renamed variable _space_Z_space__minus_But_minus_2_minus_ene_minus_1_space_2_space_3_minus_tricarboxylate to xxx_space_Z_space__minus_But_minus_2_minus_ene_minus_1_space_2_space_3_minus_tricarboxylate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_Methylcitrate to xxx_space_2_minus_Methylcitrate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R00931: _space_2_minus_Methylcitrate <=> Propanoyl_minus_CoA 
// R00405: Succinate => Succinyl_minus_CoA 
// R00238: Acetyl_minus_CoA => Acetoacetyl_minus_CoA 
// R00742: Acetyl_minus_CoA <=> Malonyl_minus_CoA 
// R04432: Propanoyl_minus_CoA => Propenoyl_minus_CoA 
// R00908: _beta__minus_Alanine => _space_3_minus_Oxopropanoate 
// R00921: Propanoyl_minus_CoA <=> Propanoyl_space_phosphate 
// R01354: Propinol_space_adenylate => Propanoate 
// R04424: _space_2_minus_Methylcitrate <=> _space_Z_space__minus_But_minus_2_minus_ene_minus_1_space_2_space_3_minus_tricarboxylate 
// R00926: Propanoyl_minus_CoA => Propinol_space_adenylate 
// R01353: Propanoate => Propanoyl_space_phosphate 
// R00409: _space_2S_space_3R_space__minus_3_minus_Hydroxybutane_minus_1_space_2_space_3_minus_tricarboxylate => Succinate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E6_space_4_space_1_space_2 = 0 M;
  real E2_space_6_space_1_space_19 = 0 M;
  real E4_space_1_space_3_space_30 = 0 M;
  real E6_space_2_space_1_space_5 = 0 M;
  real E4_space_2_space_1_space_79 = 0 M;
  real E1_space_3_space_99_space_3 = 0 M;
  real E2_space_3_space_3_space_5 = 0 M;
  real E2_space_7_space_2_space_1 = 0 M;
  real E6_space_2_space_1_space_1 = 0 M;
  real E6_space_2_space_1_space_17 = 0 M;
  real E2_space_3_space_1_space_8 = 0 M;
  real E2_space_3_space_1_space_9 = 0 M;
  real Acetoacetyl_minus_CoA(time) M;
  real Acetyl_minus_CoA(time) M;
  real xxx_space_3_minus_Oxopropanoate(time) M;
  real xxx_beta__minus_Alanine(time) M;
  real Malonyl_minus_CoA(time) M;
  real xxx_space_2S_space_3R_space__minus_3_minus_Hydroxybutane_minus_1_space_2_space_3_minus_tricarboxylate(time) M;
  real Succinate(time) M;
  real xxx_space_Z_space__minus_But_minus_2_minus_ene_minus_1_space_2_space_3_minus_tricarboxylate(time) M;
  real Propenoyl_minus_CoA(time) M;
  real xxx_space_2_minus_Methylcitrate(time) M;
  real Succinyl_minus_CoA(time) M;
  real Propanoyl_space_phosphate(time) M;
  real Propanoate(time) M;
  real Propinol_space_adenylate(time) M;
  real Propanoyl_minus_CoA(time) M;
  real R00931(time) katal;
  extern real R00931.kf;
  extern real R00931.kb;
  real R00405(time) katal;
  extern real R00405.kf;
  extern real R00405.kb;
  real R00238(time) katal;
  extern real R00238.kf;
  extern real R00238.kb;
  real R00742(time) katal;
  extern real R00742.kf;
  extern real R00742.kb;
  real R04432(time) katal;
  extern real R04432.kf;
  extern real R04432.kb;
  real R00908(time) katal;
  extern real R00908.kf;
  extern real R00908.kb;
  real R00921(time) katal;
  extern real R00921.kf;
  extern real R00921.kb;
  real R01354(time) katal;
  extern real R01354.kf;
  extern real R01354.kb;
  real R04424(time) katal;
  extern real R04424.kf;
  extern real R04424.kb;
  real R00926(time) katal;
  extern real R00926.kf;
  extern real R00926.kb;
  real R01353(time) katal;
  extern real R01353.kf;
  extern real R01353.kb;
  real R00409(time) katal;
  extern real R00409.kf;
  extern real R00409.kb;

  // equations
  when (time=time.min) Acetoacetyl_minus_CoA = 0;
  (Acetoacetyl_minus_CoA*uVol):time = R00238;
  when (time=time.min) Acetyl_minus_CoA = 0;
  (Acetyl_minus_CoA*uVol):time = -1*R00238 + -1*R00742;
  when (time=time.min) xxx_space_3_minus_Oxopropanoate = 0;
  (xxx_space_3_minus_Oxopropanoate*uVol):time = R00908;
  when (time=time.min) xxx_beta__minus_Alanine = 0;
  (xxx_beta__minus_Alanine*uVol):time = -1*R00908;
  when (time=time.min) Malonyl_minus_CoA = 0;
  (Malonyl_minus_CoA*uVol):time = R00742;
  when (time=time.min) xxx_space_2S_space_3R_space__minus_3_minus_Hydroxybutane_minus_1_space_2_space_3_minus_tricarboxylate = 0;
  (xxx_space_2S_space_3R_space__minus_3_minus_Hydroxybutane_minus_1_space_2_space_3_minus_tricarboxylate*uVol):time = -1*R00409;
  when (time=time.min) Succinate = 0;
  (Succinate*uVol):time = -1*R00405 + R00409;
  when (time=time.min) xxx_space_Z_space__minus_But_minus_2_minus_ene_minus_1_space_2_space_3_minus_tricarboxylate = 0;
  (xxx_space_Z_space__minus_But_minus_2_minus_ene_minus_1_space_2_space_3_minus_tricarboxylate*uVol):time = R04424;
  when (time=time.min) Propenoyl_minus_CoA = 0;
  (Propenoyl_minus_CoA*uVol):time = R04432;
  when (time=time.min) xxx_space_2_minus_Methylcitrate = 0;
  (xxx_space_2_minus_Methylcitrate*uVol):time = -1*R00931 + -1*R04424;
  when (time=time.min) Succinyl_minus_CoA = 0;
  (Succinyl_minus_CoA*uVol):time = R00405;
  when (time=time.min) Propanoyl_space_phosphate = 0;
  (Propanoyl_space_phosphate*uVol):time = R00921 + R01353;
  when (time=time.min) Propanoate = 0;
  (Propanoate*uVol):time = R01354 + -1*R01353;
  when (time=time.min) Propinol_space_adenylate = 0;
  (Propinol_space_adenylate*uVol):time = -1*R01354 + R00926;
  when (time=time.min) Propanoyl_minus_CoA = 0;
  (Propanoyl_minus_CoA*uVol):time = R00931 + -1*R04432 + -1*R00921 + -1*R00926;
  R00931 = R00931.kf*_space_2_minus_Methylcitrate - R00931.kb*Propanoyl_minus_CoA;
  R00405 = R00405.kf*Succinate - R00405.kb*Succinyl_minus_CoA;
  R00238 = R00238.kf*Acetyl_minus_CoA - R00238.kb*Acetoacetyl_minus_CoA;
  R00742 = R00742.kf*Acetyl_minus_CoA - R00742.kb*Malonyl_minus_CoA;
  R04432 = R04432.kf*Propanoyl_minus_CoA - R04432.kb*Propenoyl_minus_CoA;
  R00908 = R00908.kf*_beta__minus_Alanine - R00908.kb*_space_3_minus_Oxopropanoate;
  R00921 = R00921.kf*Propanoyl_minus_CoA - R00921.kb*Propanoyl_space_phosphate;
  R01354 = R01354.kf*Propinol_space_adenylate - R01354.kb*Propanoate;
  R04424 = R04424.kf*_space_2_minus_Methylcitrate - R04424.kb*_space_Z_space__minus_But_minus_2_minus_ene_minus_1_space_2_space_3_minus_tricarboxylate;
  R00926 = R00926.kf*Propanoyl_minus_CoA - R00926.kb*Propinol_space_adenylate;
  R01353 = R01353.kf*Propanoate - R01353.kb*Propanoyl_space_phosphate;
  R00409 = R00409.kf*_space_2S_space_3R_space__minus_3_minus_Hydroxybutane_minus_1_space_2_space_3_minus_tricarboxylate - R00409.kb*Succinate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E6_space_4_space_1_space_2.sbmlRole="species";
  E6_space_4_space_1_space_2.sbmlCompartment="uVol";
  E2_space_6_space_1_space_19.sbmlRole="species";
  E2_space_6_space_1_space_19.sbmlCompartment="uVol";
  E4_space_1_space_3_space_30.sbmlRole="species";
  E4_space_1_space_3_space_30.sbmlCompartment="uVol";
  E6_space_2_space_1_space_5.sbmlRole="species";
  E6_space_2_space_1_space_5.sbmlCompartment="uVol";
  E4_space_2_space_1_space_79.sbmlRole="species";
  E4_space_2_space_1_space_79.sbmlCompartment="uVol";
  E1_space_3_space_99_space_3.sbmlRole="species";
  E1_space_3_space_99_space_3.sbmlCompartment="uVol";
  E2_space_3_space_3_space_5.sbmlRole="species";
  E2_space_3_space_3_space_5.sbmlCompartment="uVol";
  E2_space_7_space_2_space_1.sbmlRole="species";
  E2_space_7_space_2_space_1.sbmlCompartment="uVol";
  E6_space_2_space_1_space_1.sbmlRole="species";
  E6_space_2_space_1_space_1.sbmlCompartment="uVol";
  E6_space_2_space_1_space_17.sbmlRole="species";
  E6_space_2_space_1_space_17.sbmlCompartment="uVol";
  E2_space_3_space_1_space_8.sbmlRole="species";
  E2_space_3_space_1_space_8.sbmlCompartment="uVol";
  E2_space_3_space_1_space_9.sbmlRole="species";
  E2_space_3_space_1_space_9.sbmlCompartment="uVol";
  Acetoacetyl_minus_CoA.sbmlRole="species";
  Acetoacetyl_minus_CoA.sbmlCompartment="uVol";
  Acetyl_minus_CoA.sbmlRole="species";
  Acetyl_minus_CoA.sbmlCompartment="uVol";
  xxx_space_3_minus_Oxopropanoate.sbmlRole="species";
  xxx_space_3_minus_Oxopropanoate.sbmlName="_space_3_minus_Oxopropanoate";
  xxx_space_3_minus_Oxopropanoate.sbmlCompartment="uVol";
  xxx_beta__minus_Alanine.sbmlRole="species";
  xxx_beta__minus_Alanine.sbmlName="_beta__minus_Alanine";
  xxx_beta__minus_Alanine.sbmlCompartment="uVol";
  Malonyl_minus_CoA.sbmlRole="species";
  Malonyl_minus_CoA.sbmlCompartment="uVol";
  xxx_space_2S_space_3R_space__minus_3_minus_Hydroxybutane_minus_1_space_2_space_3_minus_tricarboxylate.sbmlRole="species";
  xxx_space_2S_space_3R_space__minus_3_minus_Hydroxybutane_minus_1_space_2_space_3_minus_tricarboxylate.sbmlName="_space_2S_space_3R_space__minus_3_minus_Hydroxybutane_minus_1_space_2_space_3_minus_tricarboxylate";
  xxx_space_2S_space_3R_space__minus_3_minus_Hydroxybutane_minus_1_space_2_space_3_minus_tricarboxylate.sbmlCompartment="uVol";
  Succinate.sbmlRole="species";
  Succinate.sbmlCompartment="uVol";
  xxx_space_Z_space__minus_But_minus_2_minus_ene_minus_1_space_2_space_3_minus_tricarboxylate.sbmlRole="species";
  xxx_space_Z_space__minus_But_minus_2_minus_ene_minus_1_space_2_space_3_minus_tricarboxylate.sbmlName="_space_Z_space__minus_But_minus_2_minus_ene_minus_1_space_2_space_3_minus_tricarboxylate";
  xxx_space_Z_space__minus_But_minus_2_minus_ene_minus_1_space_2_space_3_minus_tricarboxylate.sbmlCompartment="uVol";
  Propenoyl_minus_CoA.sbmlRole="species";
  Propenoyl_minus_CoA.sbmlCompartment="uVol";
  xxx_space_2_minus_Methylcitrate.sbmlRole="species";
  xxx_space_2_minus_Methylcitrate.sbmlName="_space_2_minus_Methylcitrate";
  xxx_space_2_minus_Methylcitrate.sbmlCompartment="uVol";
  Succinyl_minus_CoA.sbmlRole="species";
  Succinyl_minus_CoA.sbmlCompartment="uVol";
  Propanoyl_space_phosphate.sbmlRole="species";
  Propanoyl_space_phosphate.sbmlCompartment="uVol";
  Propanoate.sbmlRole="species";
  Propanoate.sbmlCompartment="uVol";
  Propinol_space_adenylate.sbmlRole="species";
  Propinol_space_adenylate.sbmlCompartment="uVol";
  Propanoyl_minus_CoA.sbmlRole="species";
  Propanoyl_minus_CoA.sbmlCompartment="uVol";
  R00931.sbmlRole="rate";
  R00931.kf.sbmlRole="rate";
  R00931.kb.sbmlRole="rate";
  R00405.sbmlRole="rate";
  R00405.kf.sbmlRole="rate";
  R00405.kb.sbmlRole="rate";
  R00238.sbmlRole="rate";
  R00238.kf.sbmlRole="rate";
  R00238.kb.sbmlRole="rate";
  R00742.sbmlRole="rate";
  R00742.kf.sbmlRole="rate";
  R00742.kb.sbmlRole="rate";
  R04432.sbmlRole="rate";
  R04432.kf.sbmlRole="rate";
  R04432.kb.sbmlRole="rate";
  R00908.sbmlRole="rate";
  R00908.kf.sbmlRole="rate";
  R00908.kb.sbmlRole="rate";
  R00921.sbmlRole="rate";
  R00921.kf.sbmlRole="rate";
  R00921.kb.sbmlRole="rate";
  R01354.sbmlRole="rate";
  R01354.kf.sbmlRole="rate";
  R01354.kb.sbmlRole="rate";
  R04424.sbmlRole="rate";
  R04424.kf.sbmlRole="rate";
  R04424.kb.sbmlRole="rate";
  R00926.sbmlRole="rate";
  R00926.kf.sbmlRole="rate";
  R00926.kb.sbmlRole="rate";
  R01353.sbmlRole="rate";
  R01353.kf.sbmlRole="rate";
  R01353.kb.sbmlRole="rate";
  R00409.sbmlRole="rate";
  R00409.kf.sbmlRole="rate";
  R00409.kb.sbmlRole="rate";
}