// This model generated automatically from SBML
// WARNING: Renamed variable _space_2_space_5_minus_Diamino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space__minus_4_minus_pyrimidineone to xxx_space_2_space_5_minus_Diamino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space__minus_4_minus_pyrimidineone due to JSim namespace restrictions
// WARNING: Renamed variable _space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space_uracil to xxx_space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space_uracil due to JSim namespace restrictions
// WARNING: Renamed variable _space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribitylamino_space_uracil to xxx_space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribitylamino_space_uracil due to JSim namespace restrictions
// WARNING: Renamed variable _space_4_minus__space_1_minus_D_minus_Ribitylamino_space__minus_5_minus_amino_minus_2_space_6_minus_dihydroxypyrimidine to xxx_space_4_minus__space_1_minus_D_minus_Ribitylamino_space__minus_5_minus_amino_minus_2_space_6_minus_dihydroxypyrimidine due to JSim namespace restrictions
// WARNING: Renamed variable _space_6_space_7_minus_Dimethyl_minus_8_minus__space_1_minus_D_minus_ribityl_space_lumazine to xxx_space_6_space_7_minus_Dimethyl_minus_8_minus__space_1_minus_D_minus_ribityl_space_lumazine due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R03458: _space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribitylamino_space_uracil <=> _space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space_uracil 
// R00425: GTP <=> _space_2_space_5_minus_Diamino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space__minus_4_minus_pyrimidineone 
// R00161: FMN <=> FAD 
// R00066: _space_6_space_7_minus_Dimethyl_minus_8_minus__space_1_minus_D_minus_ribityl_space_lumazine <=> Riboflavin _space_4_minus__space_1_minus_D_minus_Ribitylamino_space__minus_5_minus_amino_minus_2_space_6_minus_dihydroxypyrimidine 
// R04148: Dimethylbenzimidazole <=> N1_minus__space_5_minus_Phospho_minus__alpha__minus_D_minus_ribosyl_space__minus_5_space_6_minus_dimethylbenzimidazole 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E3_space_5_space_4_space_25 = 0 M;
  real E1_space_1_space_1_space_193 = 0 M;
  real E2_space_4_space_2_space_21 = 0 M;
  real E2_space_5_space_1_space_9 = 0 M;
  real E2_space_7_space_7_space_2 = 0 M;
  real xxx_space_2_space_5_minus_Diamino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space__minus_4_minus_pyrimidineone(time) M;
  real xxx_space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space_uracil(time) M;
  real xxx_space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribitylamino_space_uracil(time) M;
  real N1_minus__space_5_minus_Phospho_minus__alpha__minus_D_minus_ribosyl_space__minus_5_space_6_minus_dimethylbenzimidazole(time) M;
  real xxx_space_4_minus__space_1_minus_D_minus_Ribitylamino_space__minus_5_minus_amino_minus_2_space_6_minus_dihydroxypyrimidine(time) M;
  real xxx_space_6_space_7_minus_Dimethyl_minus_8_minus__space_1_minus_D_minus_ribityl_space_lumazine(time) M;
  real Riboflavin(time) M;
  real Dimethylbenzimidazole(time) M;
  real FMN(time) M;
  real FAD(time) M;
  real GTP(time) M;
  real R03458(time) katal;
  extern real R03458.kf;
  extern real R03458.kb;
  real R00425(time) katal;
  extern real R00425.kf;
  extern real R00425.kb;
  real R00161(time) katal;
  extern real R00161.kf;
  extern real R00161.kb;
  real R00066(time) katal;
  extern real R00066.kf;
  extern real R00066.kb;
  real R04148(time) katal;
  extern real R04148.kf;
  extern real R04148.kb;

  // equations
  when (time=time.min) xxx_space_2_space_5_minus_Diamino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space__minus_4_minus_pyrimidineone = 0;
  (xxx_space_2_space_5_minus_Diamino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space__minus_4_minus_pyrimidineone*uVol):time = R00425;
  when (time=time.min) xxx_space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space_uracil = 0;
  (xxx_space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space_uracil*uVol):time = R03458;
  when (time=time.min) xxx_space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribitylamino_space_uracil = 0;
  (xxx_space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribitylamino_space_uracil*uVol):time = -1*R03458;
  when (time=time.min) N1_minus__space_5_minus_Phospho_minus__alpha__minus_D_minus_ribosyl_space__minus_5_space_6_minus_dimethylbenzimidazole = 0;
  (N1_minus__space_5_minus_Phospho_minus__alpha__minus_D_minus_ribosyl_space__minus_5_space_6_minus_dimethylbenzimidazole*uVol):time = R04148;
  when (time=time.min) xxx_space_4_minus__space_1_minus_D_minus_Ribitylamino_space__minus_5_minus_amino_minus_2_space_6_minus_dihydroxypyrimidine = 0;
  (xxx_space_4_minus__space_1_minus_D_minus_Ribitylamino_space__minus_5_minus_amino_minus_2_space_6_minus_dihydroxypyrimidine*uVol):time = R00066;
  when (time=time.min) xxx_space_6_space_7_minus_Dimethyl_minus_8_minus__space_1_minus_D_minus_ribityl_space_lumazine = 0;
  (xxx_space_6_space_7_minus_Dimethyl_minus_8_minus__space_1_minus_D_minus_ribityl_space_lumazine*uVol):time = -1*R00066;
  when (time=time.min) Riboflavin = 0;
  (Riboflavin*uVol):time = R00066;
  when (time=time.min) Dimethylbenzimidazole = 0;
  (Dimethylbenzimidazole*uVol):time = -1*R04148;
  when (time=time.min) FMN = 0;
  (FMN*uVol):time = -1*R00161;
  when (time=time.min) FAD = 0;
  (FAD*uVol):time = R00161;
  when (time=time.min) GTP = 0;
  (GTP*uVol):time = -1*R00425;
  R03458 = R03458.kf*_space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribitylamino_space_uracil - R03458.kb*_space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space_uracil;
  R00425 = R00425.kf*GTP - R00425.kb*_space_2_space_5_minus_Diamino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space__minus_4_minus_pyrimidineone;
  R00161 = R00161.kf*FMN - R00161.kb*FAD;
  R00066 = R00066.kf*_space_6_space_7_minus_Dimethyl_minus_8_minus__space_1_minus_D_minus_ribityl_space_lumazine - R00066.kb*Riboflavin*_space_4_minus__space_1_minus_D_minus_Ribitylamino_space__minus_5_minus_amino_minus_2_space_6_minus_dihydroxypyrimidine;
  R04148 = R04148.kf*Dimethylbenzimidazole - R04148.kb*N1_minus__space_5_minus_Phospho_minus__alpha__minus_D_minus_ribosyl_space__minus_5_space_6_minus_dimethylbenzimidazole;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E3_space_5_space_4_space_25.sbmlRole="species";
  E3_space_5_space_4_space_25.sbmlCompartment="uVol";
  E1_space_1_space_1_space_193.sbmlRole="species";
  E1_space_1_space_1_space_193.sbmlCompartment="uVol";
  E2_space_4_space_2_space_21.sbmlRole="species";
  E2_space_4_space_2_space_21.sbmlCompartment="uVol";
  E2_space_5_space_1_space_9.sbmlRole="species";
  E2_space_5_space_1_space_9.sbmlCompartment="uVol";
  E2_space_7_space_7_space_2.sbmlRole="species";
  E2_space_7_space_7_space_2.sbmlCompartment="uVol";
  xxx_space_2_space_5_minus_Diamino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space__minus_4_minus_pyrimidineone.sbmlRole="species";
  xxx_space_2_space_5_minus_Diamino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space__minus_4_minus_pyrimidineone.sbmlName="_space_2_space_5_minus_Diamino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space__minus_4_minus_pyrimidineone";
  xxx_space_2_space_5_minus_Diamino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space__minus_4_minus_pyrimidineone.sbmlCompartment="uVol";
  xxx_space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space_uracil.sbmlRole="species";
  xxx_space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space_uracil.sbmlName="_space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space_uracil";
  xxx_space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribosylamino_space_uracil.sbmlCompartment="uVol";
  xxx_space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribitylamino_space_uracil.sbmlRole="species";
  xxx_space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribitylamino_space_uracil.sbmlName="_space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribitylamino_space_uracil";
  xxx_space_5_minus_Amino_minus_6_minus__space_5_space__minus_phosphoribitylamino_space_uracil.sbmlCompartment="uVol";
  N1_minus__space_5_minus_Phospho_minus__alpha__minus_D_minus_ribosyl_space__minus_5_space_6_minus_dimethylbenzimidazole.sbmlRole="species";
  N1_minus__space_5_minus_Phospho_minus__alpha__minus_D_minus_ribosyl_space__minus_5_space_6_minus_dimethylbenzimidazole.sbmlCompartment="uVol";
  xxx_space_4_minus__space_1_minus_D_minus_Ribitylamino_space__minus_5_minus_amino_minus_2_space_6_minus_dihydroxypyrimidine.sbmlRole="species";
  xxx_space_4_minus__space_1_minus_D_minus_Ribitylamino_space__minus_5_minus_amino_minus_2_space_6_minus_dihydroxypyrimidine.sbmlName="_space_4_minus__space_1_minus_D_minus_Ribitylamino_space__minus_5_minus_amino_minus_2_space_6_minus_dihydroxypyrimidine";
  xxx_space_4_minus__space_1_minus_D_minus_Ribitylamino_space__minus_5_minus_amino_minus_2_space_6_minus_dihydroxypyrimidine.sbmlCompartment="uVol";
  xxx_space_6_space_7_minus_Dimethyl_minus_8_minus__space_1_minus_D_minus_ribityl_space_lumazine.sbmlRole="species";
  xxx_space_6_space_7_minus_Dimethyl_minus_8_minus__space_1_minus_D_minus_ribityl_space_lumazine.sbmlName="_space_6_space_7_minus_Dimethyl_minus_8_minus__space_1_minus_D_minus_ribityl_space_lumazine";
  xxx_space_6_space_7_minus_Dimethyl_minus_8_minus__space_1_minus_D_minus_ribityl_space_lumazine.sbmlCompartment="uVol";
  Riboflavin.sbmlRole="species";
  Riboflavin.sbmlCompartment="uVol";
  Dimethylbenzimidazole.sbmlRole="species";
  Dimethylbenzimidazole.sbmlCompartment="uVol";
  FMN.sbmlRole="species";
  FMN.sbmlCompartment="uVol";
  FAD.sbmlRole="species";
  FAD.sbmlCompartment="uVol";
  GTP.sbmlRole="species";
  GTP.sbmlCompartment="uVol";
  R03458.sbmlRole="rate";
  R03458.kf.sbmlRole="rate";
  R03458.kb.sbmlRole="rate";
  R00425.sbmlRole="rate";
  R00425.kf.sbmlRole="rate";
  R00425.kb.sbmlRole="rate";
  R00161.sbmlRole="rate";
  R00161.kf.sbmlRole="rate";
  R00161.kb.sbmlRole="rate";
  R00066.sbmlRole="rate";
  R00066.kf.sbmlRole="rate";
  R00066.kb.sbmlRole="rate";
  R04148.sbmlRole="rate";
  R04148.kf.sbmlRole="rate";
  R04148.kb.sbmlRole="rate";
}