// This model generated automatically from SBML
// WARNING: Renamed variable _space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid to xxx_space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid_space_6_minus_phosphate to xxx_space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid_space_6_minus_phosphate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal to xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus_Oxopropanoate to xxx_space_3_minus_Oxopropanoate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R05660: D_minus_2_space_3_minus_Diketo_space_4_minus_deoxy_minus_epi_minus_inositol => _space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid 
// R00705: _space_3_minus_Oxopropanoate <=> Acetyl_minus_CoA 
// R05661: _space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid <=> _space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid_space_6_minus_phosphate 
// R01015: _space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal => Glycerone_space_phosphate 
// R05378: _space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid_space_6_minus_phosphate <=> _space_3_minus_Oxopropanoate Glycerone_space_phosphate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E1_space__minus__space__minus__space__minus_ = 0 M;
  real E2_space_7_space_1_space_92 = 0 M;
  real E4_space_1_space_2_space_29 = 0 M;
  real E5_space_3_space_1_space_1 = 0 M;
  real E1_space_2_space_1_space_27 = 0 M;
  real D_minus_2_space_3_minus_Diketo_space_4_minus_deoxy_minus_epi_minus_inositol(time) M;
  real xxx_space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid(time) M;
  real xxx_space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid_space_6_minus_phosphate(time) M;
  real xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal(time) M;
  real Glycerone_space_phosphate(time) M;
  real xxx_space_3_minus_Oxopropanoate(time) M;
  real Acetyl_minus_CoA(time) M;
  real R05660(time) katal;
  extern real R05660.kf;
  extern real R05660.kb;
  real R00705(time) katal;
  extern real R00705.kf;
  extern real R00705.kb;
  real R05661(time) katal;
  extern real R05661.kf;
  extern real R05661.kb;
  real R01015(time) katal;
  extern real R01015.kf;
  extern real R01015.kb;
  real R05378(time) katal;
  extern real R05378.kf;
  extern real R05378.kb;

  // equations
  when (time=time.min) D_minus_2_space_3_minus_Diketo_space_4_minus_deoxy_minus_epi_minus_inositol = 0;
  (D_minus_2_space_3_minus_Diketo_space_4_minus_deoxy_minus_epi_minus_inositol*uVol):time = -1*R05660;
  when (time=time.min) xxx_space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid = 0;
  (xxx_space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid*uVol):time = R05660 + -1*R05661;
  when (time=time.min) xxx_space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid_space_6_minus_phosphate = 0;
  (xxx_space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid_space_6_minus_phosphate*uVol):time = R05661 + -1*R05378;
  when (time=time.min) xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal = 0;
  (xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal*uVol):time = -1*R01015;
  when (time=time.min) Glycerone_space_phosphate = 0;
  (Glycerone_space_phosphate*uVol):time = R01015 + R05378;
  when (time=time.min) xxx_space_3_minus_Oxopropanoate = 0;
  (xxx_space_3_minus_Oxopropanoate*uVol):time = -1*R00705 + R05378;
  when (time=time.min) Acetyl_minus_CoA = 0;
  (Acetyl_minus_CoA*uVol):time = R00705;
  R05660 = R05660.kf*D_minus_2_space_3_minus_Diketo_space_4_minus_deoxy_minus_epi_minus_inositol - R05660.kb*_space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid;
  R00705 = R00705.kf*_space_3_minus_Oxopropanoate - R00705.kb*Acetyl_minus_CoA;
  R05661 = R05661.kf*_space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid - R05661.kb*_space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid_space_6_minus_phosphate;
  R01015 = R01015.kf*_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal - R01015.kb*Glycerone_space_phosphate;
  R05378 = R05378.kf*_space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid_space_6_minus_phosphate - R05378.kb*_space_3_minus_Oxopropanoate*Glycerone_space_phosphate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E1_space__minus__space__minus__space__minus_.sbmlRole="species";
  E1_space__minus__space__minus__space__minus_.sbmlCompartment="uVol";
  E2_space_7_space_1_space_92.sbmlRole="species";
  E2_space_7_space_1_space_92.sbmlCompartment="uVol";
  E4_space_1_space_2_space_29.sbmlRole="species";
  E4_space_1_space_2_space_29.sbmlCompartment="uVol";
  E5_space_3_space_1_space_1.sbmlRole="species";
  E5_space_3_space_1_space_1.sbmlCompartment="uVol";
  E1_space_2_space_1_space_27.sbmlRole="species";
  E1_space_2_space_1_space_27.sbmlCompartment="uVol";
  D_minus_2_space_3_minus_Diketo_space_4_minus_deoxy_minus_epi_minus_inositol.sbmlRole="species";
  D_minus_2_space_3_minus_Diketo_space_4_minus_deoxy_minus_epi_minus_inositol.sbmlCompartment="uVol";
  xxx_space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid.sbmlRole="species";
  xxx_space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid.sbmlName="_space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid";
  xxx_space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid.sbmlCompartment="uVol";
  xxx_space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid_space_6_minus_phosphate.sbmlRole="species";
  xxx_space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid_space_6_minus_phosphate.sbmlName="_space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid_space_6_minus_phosphate";
  xxx_space_2_minus_Deoxy_minus_5_minus_keto_minus_D_minus_gluconic_space_acid_space_6_minus_phosphate.sbmlCompartment="uVol";
  xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal.sbmlRole="species";
  xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal.sbmlName="_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal";
  xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal.sbmlCompartment="uVol";
  Glycerone_space_phosphate.sbmlRole="species";
  Glycerone_space_phosphate.sbmlCompartment="uVol";
  xxx_space_3_minus_Oxopropanoate.sbmlRole="species";
  xxx_space_3_minus_Oxopropanoate.sbmlName="_space_3_minus_Oxopropanoate";
  xxx_space_3_minus_Oxopropanoate.sbmlCompartment="uVol";
  Acetyl_minus_CoA.sbmlRole="species";
  Acetyl_minus_CoA.sbmlCompartment="uVol";
  R05660.sbmlRole="rate";
  R05660.kf.sbmlRole="rate";
  R05660.kb.sbmlRole="rate";
  R00705.sbmlRole="rate";
  R00705.kf.sbmlRole="rate";
  R00705.kb.sbmlRole="rate";
  R05661.sbmlRole="rate";
  R05661.kf.sbmlRole="rate";
  R05661.kb.sbmlRole="rate";
  R01015.sbmlRole="rate";
  R01015.kf.sbmlRole="rate";
  R01015.kb.sbmlRole="rate";
  R05378.sbmlRole="rate";
  R05378.kf.sbmlRole="rate";
  R05378.kb.sbmlRole="rate";
}