// This model generated automatically from SBML
// WARNING: Renamed variable _space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate to xxx_space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate to xxx_space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_Phospho_minus_4_minus__space_cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol to xxx_space_2_minus_Phospho_minus_4_minus__space_cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol due to JSim namespace restrictions
// WARNING: Renamed variable _space_4_minus__space_Cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol to xxx_space_4_minus__space_Cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate to xxx_space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate due to JSim namespace restrictions
// WARNING: Renamed variable _space_1_minus_Deoxy_minus_D_minus_xylulose_space_5_minus_phosphate to xxx_space_1_minus_Deoxy_minus_D_minus_xylulose_space_5_minus_phosphate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal to xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R05634: _space_4_minus__space_Cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol <=> _space_2_minus_Phospho_minus_4_minus__space_cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol 
// R05633: _space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate <=> _space_4_minus__space_Cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol 
// R05636: Pyruvate _space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal <=> _space_1_minus_Deoxy_minus_D_minus_xylulose_space_5_minus_phosphate 
// R03643: Vitamin_space_K <=> Reduced_space_Vitamin_space_K 
// R05688: _space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate <=> _space_1_minus_Deoxy_minus_D_minus_xylulose_space_5_minus_phosphate 
// R05637: _space_2_minus_Phospho_minus_4_minus__space_cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol <=> _space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate 
// R02003: Geranyl_space_diphosphate Isopentenyl_space_diphosphate <=> trans_space_trans_minus_Farnesyl_space_diphosphate 
// R05612: all_minus_trans_minus_Hexaprenyl_space_diphosphate => all_minus_trans_minus_Heptaprenyl_space_diphosphate 
// R01658: Dimethylallyl_space_diphosphate Isopentenyl_space_diphosphate <=> Geranyl_space_diphosphate 
// R05883: _space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate <=> _space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate 
// R05884: _space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate <=> Isopentenyl_space_diphosphate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E1_space_17_space_1_space_2 = 0 M;
  real E2_space_5_space_1_space_10 = 0 M;
  real E1_space_17_space_4_space_3 = 0 M;
  real E4_space_6_space_1_space_12 = 0 M;
  real E2_space_7_space_1_space_148 = 0 M;
  real E2_space_5_space_1_space_30 = 0 M;
  real E1_space_6_space_5_space_2 = 0 M;
  real E2_space_7_space_7_space_60 = 0 M;
  real E1_space_1_space_1_space_267 = 0 M;
  real E2_space_2_space_1_space_7 = 0 M;
  real Dimethylallyl_space_diphosphate(time) M;
  real Geranyl_space_diphosphate(time) M;
  real Isopentenyl_space_diphosphate(time) M;
  real xxx_space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate(time) M;
  real trans_space_trans_minus_Farnesyl_space_diphosphate(time) M;
  real xxx_space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate(time) M;
  real xxx_space_2_minus_Phospho_minus_4_minus__space_cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol(time) M;
  real all_minus_trans_minus_Hexaprenyl_space_diphosphate(time) M;
  real xxx_space_4_minus__space_Cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol(time) M;
  real Vitamin_space_K(time) M;
  real Reduced_space_Vitamin_space_K(time) M;
  real all_minus_trans_minus_Heptaprenyl_space_diphosphate(time) M;
  real xxx_space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate(time) M;
  real xxx_space_1_minus_Deoxy_minus_D_minus_xylulose_space_5_minus_phosphate(time) M;
  real Pyruvate(time) M;
  real xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal(time) M;
  real R05634(time) katal;
  extern real R05634.kf;
  extern real R05634.kb;
  real R05633(time) katal;
  extern real R05633.kf;
  extern real R05633.kb;
  real R05636(time) katal;
  extern real R05636.kf;
  extern real R05636.kb;
  real R03643(time) katal;
  extern real R03643.kf;
  extern real R03643.kb;
  real R05688(time) katal;
  extern real R05688.kf;
  extern real R05688.kb;
  real R05637(time) katal;
  extern real R05637.kf;
  extern real R05637.kb;
  real R02003(time) katal;
  extern real R02003.kf;
  extern real R02003.kb;
  real R05612(time) katal;
  extern real R05612.kf;
  extern real R05612.kb;
  real R01658(time) katal;
  extern real R01658.kf;
  extern real R01658.kb;
  real R05883(time) katal;
  extern real R05883.kf;
  extern real R05883.kb;
  real R05884(time) katal;
  extern real R05884.kf;
  extern real R05884.kb;

  // equations
  when (time=time.min) Dimethylallyl_space_diphosphate = 0;
  (Dimethylallyl_space_diphosphate*uVol):time = -1*R01658;
  when (time=time.min) Geranyl_space_diphosphate = 0;
  (Geranyl_space_diphosphate*uVol):time = -1*R02003 + R01658;
  when (time=time.min) Isopentenyl_space_diphosphate = 0;
  (Isopentenyl_space_diphosphate*uVol):time = -1*R02003 + -1*R01658 + R05884;
  when (time=time.min) xxx_space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate = 0;
  (xxx_space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate*uVol):time = R05883 + -1*R05884;
  when (time=time.min) trans_space_trans_minus_Farnesyl_space_diphosphate = 0;
  (trans_space_trans_minus_Farnesyl_space_diphosphate*uVol):time = R02003;
  when (time=time.min) xxx_space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate = 0;
  (xxx_space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate*uVol):time = R05637 + -1*R05883;
  when (time=time.min) xxx_space_2_minus_Phospho_minus_4_minus__space_cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol = 0;
  (xxx_space_2_minus_Phospho_minus_4_minus__space_cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol*uVol):time = R05634 + -1*R05637;
  when (time=time.min) all_minus_trans_minus_Hexaprenyl_space_diphosphate = 0;
  (all_minus_trans_minus_Hexaprenyl_space_diphosphate*uVol):time = -1*R05612;
  when (time=time.min) xxx_space_4_minus__space_Cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol = 0;
  (xxx_space_4_minus__space_Cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol*uVol):time = -1*R05634 + R05633;
  when (time=time.min) Vitamin_space_K = 0;
  (Vitamin_space_K*uVol):time = -1*R03643;
  when (time=time.min) Reduced_space_Vitamin_space_K = 0;
  (Reduced_space_Vitamin_space_K*uVol):time = R03643;
  when (time=time.min) all_minus_trans_minus_Heptaprenyl_space_diphosphate = 0;
  (all_minus_trans_minus_Heptaprenyl_space_diphosphate*uVol):time = R05612;
  when (time=time.min) xxx_space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate = 0;
  (xxx_space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate*uVol):time = -1*R05633 + -1*R05688;
  when (time=time.min) xxx_space_1_minus_Deoxy_minus_D_minus_xylulose_space_5_minus_phosphate = 0;
  (xxx_space_1_minus_Deoxy_minus_D_minus_xylulose_space_5_minus_phosphate*uVol):time = R05636 + R05688;
  when (time=time.min) Pyruvate = 0;
  (Pyruvate*uVol):time = -1*R05636;
  when (time=time.min) xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal = 0;
  (xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal*uVol):time = -1*R05636;
  R05634 = R05634.kf*_space_4_minus__space_Cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol - R05634.kb*_space_2_minus_Phospho_minus_4_minus__space_cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol;
  R05633 = R05633.kf*_space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate - R05633.kb*_space_4_minus__space_Cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol;
  R05636 = R05636.kf*Pyruvate*_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal - R05636.kb*_space_1_minus_Deoxy_minus_D_minus_xylulose_space_5_minus_phosphate;
  R03643 = R03643.kf*Vitamin_space_K - R03643.kb*Reduced_space_Vitamin_space_K;
  R05688 = R05688.kf*_space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate - R05688.kb*_space_1_minus_Deoxy_minus_D_minus_xylulose_space_5_minus_phosphate;
  R05637 = R05637.kf*_space_2_minus_Phospho_minus_4_minus__space_cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol - R05637.kb*_space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate;
  R02003 = R02003.kf*Geranyl_space_diphosphate*Isopentenyl_space_diphosphate - R02003.kb*trans_space_trans_minus_Farnesyl_space_diphosphate;
  R05612 = R05612.kf*all_minus_trans_minus_Hexaprenyl_space_diphosphate - R05612.kb*all_minus_trans_minus_Heptaprenyl_space_diphosphate;
  R01658 = R01658.kf*Dimethylallyl_space_diphosphate*Isopentenyl_space_diphosphate - R01658.kb*Geranyl_space_diphosphate;
  R05883 = R05883.kf*_space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate - R05883.kb*_space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate;
  R05884 = R05884.kf*_space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate - R05884.kb*Isopentenyl_space_diphosphate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E1_space_17_space_1_space_2.sbmlRole="species";
  E1_space_17_space_1_space_2.sbmlCompartment="uVol";
  E2_space_5_space_1_space_10.sbmlRole="species";
  E2_space_5_space_1_space_10.sbmlCompartment="uVol";
  E1_space_17_space_4_space_3.sbmlRole="species";
  E1_space_17_space_4_space_3.sbmlCompartment="uVol";
  E4_space_6_space_1_space_12.sbmlRole="species";
  E4_space_6_space_1_space_12.sbmlCompartment="uVol";
  E2_space_7_space_1_space_148.sbmlRole="species";
  E2_space_7_space_1_space_148.sbmlCompartment="uVol";
  E2_space_5_space_1_space_30.sbmlRole="species";
  E2_space_5_space_1_space_30.sbmlCompartment="uVol";
  E1_space_6_space_5_space_2.sbmlRole="species";
  E1_space_6_space_5_space_2.sbmlCompartment="uVol";
  E2_space_7_space_7_space_60.sbmlRole="species";
  E2_space_7_space_7_space_60.sbmlCompartment="uVol";
  E1_space_1_space_1_space_267.sbmlRole="species";
  E1_space_1_space_1_space_267.sbmlCompartment="uVol";
  E2_space_2_space_1_space_7.sbmlRole="species";
  E2_space_2_space_1_space_7.sbmlCompartment="uVol";
  Dimethylallyl_space_diphosphate.sbmlRole="species";
  Dimethylallyl_space_diphosphate.sbmlCompartment="uVol";
  Geranyl_space_diphosphate.sbmlRole="species";
  Geranyl_space_diphosphate.sbmlCompartment="uVol";
  Isopentenyl_space_diphosphate.sbmlRole="species";
  Isopentenyl_space_diphosphate.sbmlCompartment="uVol";
  xxx_space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate.sbmlRole="species";
  xxx_space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate.sbmlName="_space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate";
  xxx_space_1_minus_Hydroxy_minus_2_minus_methyl_minus_2_minus_butenyl_space_4_minus_diphosphate.sbmlCompartment="uVol";
  trans_space_trans_minus_Farnesyl_space_diphosphate.sbmlRole="species";
  trans_space_trans_minus_Farnesyl_space_diphosphate.sbmlCompartment="uVol";
  xxx_space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate.sbmlRole="species";
  xxx_space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate.sbmlName="_space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate";
  xxx_space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_2_space_4_minus_cyclodiphosphate.sbmlCompartment="uVol";
  xxx_space_2_minus_Phospho_minus_4_minus__space_cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol.sbmlRole="species";
  xxx_space_2_minus_Phospho_minus_4_minus__space_cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol.sbmlName="_space_2_minus_Phospho_minus_4_minus__space_cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol";
  xxx_space_2_minus_Phospho_minus_4_minus__space_cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol.sbmlCompartment="uVol";
  all_minus_trans_minus_Hexaprenyl_space_diphosphate.sbmlRole="species";
  all_minus_trans_minus_Hexaprenyl_space_diphosphate.sbmlCompartment="uVol";
  xxx_space_4_minus__space_Cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol.sbmlRole="species";
  xxx_space_4_minus__space_Cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol.sbmlName="_space_4_minus__space_Cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol";
  xxx_space_4_minus__space_Cytidine_space_5_space__minus_diphospho_space__minus_2_minus_C_minus_methyl_minus_D_minus_erythritol.sbmlCompartment="uVol";
  Vitamin_space_K.sbmlRole="species";
  Vitamin_space_K.sbmlCompartment="uVol";
  Reduced_space_Vitamin_space_K.sbmlRole="species";
  Reduced_space_Vitamin_space_K.sbmlCompartment="uVol";
  all_minus_trans_minus_Heptaprenyl_space_diphosphate.sbmlRole="species";
  all_minus_trans_minus_Heptaprenyl_space_diphosphate.sbmlCompartment="uVol";
  xxx_space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate.sbmlRole="species";
  xxx_space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate.sbmlName="_space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate";
  xxx_space_2_minus_C_minus_Methyl_minus_D_minus_erythritol_space_4_minus_phosphate.sbmlCompartment="uVol";
  xxx_space_1_minus_Deoxy_minus_D_minus_xylulose_space_5_minus_phosphate.sbmlRole="species";
  xxx_space_1_minus_Deoxy_minus_D_minus_xylulose_space_5_minus_phosphate.sbmlName="_space_1_minus_Deoxy_minus_D_minus_xylulose_space_5_minus_phosphate";
  xxx_space_1_minus_Deoxy_minus_D_minus_xylulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  Pyruvate.sbmlRole="species";
  Pyruvate.sbmlCompartment="uVol";
  xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal.sbmlRole="species";
  xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal.sbmlName="_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal";
  xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal.sbmlCompartment="uVol";
  R05634.sbmlRole="rate";
  R05634.kf.sbmlRole="rate";
  R05634.kb.sbmlRole="rate";
  R05633.sbmlRole="rate";
  R05633.kf.sbmlRole="rate";
  R05633.kb.sbmlRole="rate";
  R05636.sbmlRole="rate";
  R05636.kf.sbmlRole="rate";
  R05636.kb.sbmlRole="rate";
  R03643.sbmlRole="rate";
  R03643.kf.sbmlRole="rate";
  R03643.kb.sbmlRole="rate";
  R05688.sbmlRole="rate";
  R05688.kf.sbmlRole="rate";
  R05688.kb.sbmlRole="rate";
  R05637.sbmlRole="rate";
  R05637.kf.sbmlRole="rate";
  R05637.kb.sbmlRole="rate";
  R02003.sbmlRole="rate";
  R02003.kf.sbmlRole="rate";
  R02003.kb.sbmlRole="rate";
  R05612.sbmlRole="rate";
  R05612.kf.sbmlRole="rate";
  R05612.kb.sbmlRole="rate";
  R01658.sbmlRole="rate";
  R01658.kf.sbmlRole="rate";
  R01658.kb.sbmlRole="rate";
  R05883.sbmlRole="rate";
  R05883.kf.sbmlRole="rate";
  R05883.kb.sbmlRole="rate";
  R05884.sbmlRole="rate";
  R05884.kf.sbmlRole="rate";
  R05884.kb.sbmlRole="rate";
}