// This model generated automatically from SBML
// WARNING: Renamed variable _space_4_minus_Hydroxy_minus_2_minus_oxopentanoate to xxx_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus_Oxoadipyl_minus_CoA to xxx_space_3_minus_Oxoadipyl_minus_CoA due to JSim namespace restrictions
// WARNING: Renamed variable _space_4_minus_Carboxy_minus_2_minus_oxo_minus_4_minus_pentenoate to xxx_space_4_minus_Carboxy_minus_2_minus_oxo_minus_4_minus_pentenoate due to JSim namespace restrictions
// WARNING: Renamed variable _space_4_minus_Carboxy_minus_2_minus_hydroxy_minus_cis_space_cis_minus_muconate to xxx_space_4_minus_Carboxy_minus_2_minus_hydroxy_minus_cis_space_cis_minus_muconate due to JSim namespace restrictions
// WARNING: Renamed variable _space_4_minus_Carboxy_minus_4_minus_hydroxy_minus_2_minus_oxoadipate to xxx_space_4_minus_Carboxy_minus_4_minus_hydroxy_minus_2_minus_oxoadipate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_Hydroxymuconate to xxx_space_2_minus_Hydroxymuconate due to JSim namespace restrictions
// WARNING: Renamed variable _space_Z_space__minus_5_minus_Oxohex_minus_2_minus_enedioate to xxx_space_Z_space__minus_5_minus_Oxohex_minus_2_minus_enedioate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R04417: Parapyruvate <=> _space_4_minus_Carboxy_minus_2_minus_oxo_minus_4_minus_pentenoate 
// R00829: Succinyl_minus_CoA Acetyl_minus_CoA <=> _space_3_minus_Oxoadipyl_minus_CoA 
// R03966: _space_2_minus_Hydroxymuconate <=> _space_Z_space__minus_5_minus_Oxohex_minus_2_minus_enedioate 
// R04399: _space_4_minus_Carboxy_minus_4_minus_hydroxy_minus_2_minus_oxoadipate <=> _space_4_minus_Carboxy_minus_2_minus_hydroxy_minus_cis_space_cis_minus_muconate 
// R04223: _space_Z_space__minus_5_minus_Oxohex_minus_2_minus_enedioate <=> _space_4_minus_Hydroxy_minus_2_minus_oxopentanoate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_3_space_1_space_16 = 0 M;
  real E4_space_2_space_1_space__minus_ = 0 M;
  real E5_space_3_space_2_space__minus_ = 0 M;
  real E4_space_1_space_1_space__minus_ = 0 M;
  real xxx_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate(time) M;
  real Acetyl_minus_CoA(time) M;
  real xxx_space_3_minus_Oxoadipyl_minus_CoA(time) M;
  real Succinyl_minus_CoA(time) M;
  real xxx_space_4_minus_Carboxy_minus_2_minus_oxo_minus_4_minus_pentenoate(time) M;
  real Parapyruvate(time) M;
  real xxx_space_4_minus_Carboxy_minus_2_minus_hydroxy_minus_cis_space_cis_minus_muconate(time) M;
  real xxx_space_4_minus_Carboxy_minus_4_minus_hydroxy_minus_2_minus_oxoadipate(time) M;
  real xxx_space_2_minus_Hydroxymuconate(time) M;
  real xxx_space_Z_space__minus_5_minus_Oxohex_minus_2_minus_enedioate(time) M;
  real R04417(time) katal;
  extern real R04417.kf;
  extern real R04417.kb;
  real R00829(time) katal;
  extern real R00829.kf;
  extern real R00829.kb;
  real R03966(time) katal;
  extern real R03966.kf;
  extern real R03966.kb;
  real R04399(time) katal;
  extern real R04399.kf;
  extern real R04399.kb;
  real R04223(time) katal;
  extern real R04223.kf;
  extern real R04223.kb;

  // equations
  when (time=time.min) xxx_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate = 0;
  (xxx_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate*uVol):time = R04223;
  when (time=time.min) Acetyl_minus_CoA = 0;
  (Acetyl_minus_CoA*uVol):time = -1*R00829;
  when (time=time.min) xxx_space_3_minus_Oxoadipyl_minus_CoA = 0;
  (xxx_space_3_minus_Oxoadipyl_minus_CoA*uVol):time = R00829;
  when (time=time.min) Succinyl_minus_CoA = 0;
  (Succinyl_minus_CoA*uVol):time = -1*R00829;
  when (time=time.min) xxx_space_4_minus_Carboxy_minus_2_minus_oxo_minus_4_minus_pentenoate = 0;
  (xxx_space_4_minus_Carboxy_minus_2_minus_oxo_minus_4_minus_pentenoate*uVol):time = R04417;
  when (time=time.min) Parapyruvate = 0;
  (Parapyruvate*uVol):time = -1*R04417;
  when (time=time.min) xxx_space_4_minus_Carboxy_minus_2_minus_hydroxy_minus_cis_space_cis_minus_muconate = 0;
  (xxx_space_4_minus_Carboxy_minus_2_minus_hydroxy_minus_cis_space_cis_minus_muconate*uVol):time = R04399;
  when (time=time.min) xxx_space_4_minus_Carboxy_minus_4_minus_hydroxy_minus_2_minus_oxoadipate = 0;
  (xxx_space_4_minus_Carboxy_minus_4_minus_hydroxy_minus_2_minus_oxoadipate*uVol):time = -1*R04399;
  when (time=time.min) xxx_space_2_minus_Hydroxymuconate = 0;
  (xxx_space_2_minus_Hydroxymuconate*uVol):time = -1*R03966;
  when (time=time.min) xxx_space_Z_space__minus_5_minus_Oxohex_minus_2_minus_enedioate = 0;
  (xxx_space_Z_space__minus_5_minus_Oxohex_minus_2_minus_enedioate*uVol):time = R03966 + -1*R04223;
  R04417 = R04417.kf*Parapyruvate - R04417.kb*_space_4_minus_Carboxy_minus_2_minus_oxo_minus_4_minus_pentenoate;
  R00829 = R00829.kf*Succinyl_minus_CoA*Acetyl_minus_CoA - R00829.kb*_space_3_minus_Oxoadipyl_minus_CoA;
  R03966 = R03966.kf*_space_2_minus_Hydroxymuconate - R03966.kb*_space_Z_space__minus_5_minus_Oxohex_minus_2_minus_enedioate;
  R04399 = R04399.kf*_space_4_minus_Carboxy_minus_4_minus_hydroxy_minus_2_minus_oxoadipate - R04399.kb*_space_4_minus_Carboxy_minus_2_minus_hydroxy_minus_cis_space_cis_minus_muconate;
  R04223 = R04223.kf*_space_Z_space__minus_5_minus_Oxohex_minus_2_minus_enedioate - R04223.kb*_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_3_space_1_space_16.sbmlRole="species";
  E2_space_3_space_1_space_16.sbmlCompartment="uVol";
  E4_space_2_space_1_space__minus_.sbmlRole="species";
  E4_space_2_space_1_space__minus_.sbmlCompartment="uVol";
  E5_space_3_space_2_space__minus_.sbmlRole="species";
  E5_space_3_space_2_space__minus_.sbmlCompartment="uVol";
  E4_space_1_space_1_space__minus_.sbmlRole="species";
  E4_space_1_space_1_space__minus_.sbmlCompartment="uVol";
  xxx_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate.sbmlRole="species";
  xxx_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate.sbmlName="_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate";
  xxx_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate.sbmlCompartment="uVol";
  Acetyl_minus_CoA.sbmlRole="species";
  Acetyl_minus_CoA.sbmlCompartment="uVol";
  xxx_space_3_minus_Oxoadipyl_minus_CoA.sbmlRole="species";
  xxx_space_3_minus_Oxoadipyl_minus_CoA.sbmlName="_space_3_minus_Oxoadipyl_minus_CoA";
  xxx_space_3_minus_Oxoadipyl_minus_CoA.sbmlCompartment="uVol";
  Succinyl_minus_CoA.sbmlRole="species";
  Succinyl_minus_CoA.sbmlCompartment="uVol";
  xxx_space_4_minus_Carboxy_minus_2_minus_oxo_minus_4_minus_pentenoate.sbmlRole="species";
  xxx_space_4_minus_Carboxy_minus_2_minus_oxo_minus_4_minus_pentenoate.sbmlName="_space_4_minus_Carboxy_minus_2_minus_oxo_minus_4_minus_pentenoate";
  xxx_space_4_minus_Carboxy_minus_2_minus_oxo_minus_4_minus_pentenoate.sbmlCompartment="uVol";
  Parapyruvate.sbmlRole="species";
  Parapyruvate.sbmlCompartment="uVol";
  xxx_space_4_minus_Carboxy_minus_2_minus_hydroxy_minus_cis_space_cis_minus_muconate.sbmlRole="species";
  xxx_space_4_minus_Carboxy_minus_2_minus_hydroxy_minus_cis_space_cis_minus_muconate.sbmlName="_space_4_minus_Carboxy_minus_2_minus_hydroxy_minus_cis_space_cis_minus_muconate";
  xxx_space_4_minus_Carboxy_minus_2_minus_hydroxy_minus_cis_space_cis_minus_muconate.sbmlCompartment="uVol";
  xxx_space_4_minus_Carboxy_minus_4_minus_hydroxy_minus_2_minus_oxoadipate.sbmlRole="species";
  xxx_space_4_minus_Carboxy_minus_4_minus_hydroxy_minus_2_minus_oxoadipate.sbmlName="_space_4_minus_Carboxy_minus_4_minus_hydroxy_minus_2_minus_oxoadipate";
  xxx_space_4_minus_Carboxy_minus_4_minus_hydroxy_minus_2_minus_oxoadipate.sbmlCompartment="uVol";
  xxx_space_2_minus_Hydroxymuconate.sbmlRole="species";
  xxx_space_2_minus_Hydroxymuconate.sbmlName="_space_2_minus_Hydroxymuconate";
  xxx_space_2_minus_Hydroxymuconate.sbmlCompartment="uVol";
  xxx_space_Z_space__minus_5_minus_Oxohex_minus_2_minus_enedioate.sbmlRole="species";
  xxx_space_Z_space__minus_5_minus_Oxohex_minus_2_minus_enedioate.sbmlName="_space_Z_space__minus_5_minus_Oxohex_minus_2_minus_enedioate";
  xxx_space_Z_space__minus_5_minus_Oxohex_minus_2_minus_enedioate.sbmlCompartment="uVol";
  R04417.sbmlRole="rate";
  R04417.kf.sbmlRole="rate";
  R04417.kb.sbmlRole="rate";
  R00829.sbmlRole="rate";
  R00829.kf.sbmlRole="rate";
  R00829.kb.sbmlRole="rate";
  R03966.sbmlRole="rate";
  R03966.kf.sbmlRole="rate";
  R03966.kb.sbmlRole="rate";
  R04399.sbmlRole="rate";
  R04399.kf.sbmlRole="rate";
  R04399.kb.sbmlRole="rate";
  R04223.sbmlRole="rate";
  R04223.kf.sbmlRole="rate";
  R04223.kb.sbmlRole="rate";
}