// This model generated automatically from SBML
// WARNING: Renamed variable _space_5_minus_O_minus__space_1_minus_Carboxyvinyl_space__minus_3_minus_phosphoshikimate to xxx_space_5_minus_O_minus__space_1_minus_Carboxyvinyl_space__minus_3_minus_phosphoshikimate due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate to xxx_space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R00734: L_minus_Tyrosine => _space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate 
// R02918: L_minus_Tyrosine <=> L_minus_Tyrosyl_minus_tRNA_space_Tyr_space_ 
// R00694: Phenylpyruvate => L_minus_Phenylalanine 
// R03660: L_minus_Phenylalanine <=> L_minus_Phenylalanyl_minus_tRNA_space_Phe_space_ 
// R03460: Shikimate_space_3_minus_phosphate => _space_5_minus_O_minus__space_1_minus_Carboxyvinyl_space__minus_3_minus_phosphoshikimate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_5_space_1_space_19 = 0 M;
  real E6_space_1_space_1_space_20 = 0 M;
  real E2_space_6_space_1_space_1 = 0 M;
  real E6_space_1_space_1_space_1 = 0 M;
  real Shikimate_space_3_minus_phosphate(time) M;
  real xxx_space_5_minus_O_minus__space_1_minus_Carboxyvinyl_space__minus_3_minus_phosphoshikimate(time) M;
  real L_minus_Phenylalanyl_minus_tRNA_space_Phe_space_(time) M;
  real L_minus_Phenylalanine(time) M;
  real Phenylpyruvate(time) M;
  real L_minus_Tyrosyl_minus_tRNA_space_Tyr_space_(time) M;
  real L_minus_Tyrosine(time) M;
  real xxx_space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate(time) M;
  real R00734(time) katal;
  extern real R00734.kf;
  extern real R00734.kb;
  real R02918(time) katal;
  extern real R02918.kf;
  extern real R02918.kb;
  real R00694(time) katal;
  extern real R00694.kf;
  extern real R00694.kb;
  real R03660(time) katal;
  extern real R03660.kf;
  extern real R03660.kb;
  real R03460(time) katal;
  extern real R03460.kf;
  extern real R03460.kb;

  // equations
  when (time=time.min) Shikimate_space_3_minus_phosphate = 0;
  (Shikimate_space_3_minus_phosphate*uVol):time = -1*R03460;
  when (time=time.min) xxx_space_5_minus_O_minus__space_1_minus_Carboxyvinyl_space__minus_3_minus_phosphoshikimate = 0;
  (xxx_space_5_minus_O_minus__space_1_minus_Carboxyvinyl_space__minus_3_minus_phosphoshikimate*uVol):time = R03460;
  when (time=time.min) L_minus_Phenylalanyl_minus_tRNA_space_Phe_space_ = 0;
  (L_minus_Phenylalanyl_minus_tRNA_space_Phe_space_*uVol):time = R03660;
  when (time=time.min) L_minus_Phenylalanine = 0;
  (L_minus_Phenylalanine*uVol):time = R00694 + -1*R03660;
  when (time=time.min) Phenylpyruvate = 0;
  (Phenylpyruvate*uVol):time = -1*R00694;
  when (time=time.min) L_minus_Tyrosyl_minus_tRNA_space_Tyr_space_ = 0;
  (L_minus_Tyrosyl_minus_tRNA_space_Tyr_space_*uVol):time = R02918;
  when (time=time.min) L_minus_Tyrosine = 0;
  (L_minus_Tyrosine*uVol):time = -1*R00734 + -1*R02918;
  when (time=time.min) xxx_space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate = 0;
  (xxx_space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate*uVol):time = R00734;
  R00734 = R00734.kf*L_minus_Tyrosine - R00734.kb*_space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate;
  R02918 = R02918.kf*L_minus_Tyrosine - R02918.kb*L_minus_Tyrosyl_minus_tRNA_space_Tyr_space_;
  R00694 = R00694.kf*Phenylpyruvate - R00694.kb*L_minus_Phenylalanine;
  R03660 = R03660.kf*L_minus_Phenylalanine - R03660.kb*L_minus_Phenylalanyl_minus_tRNA_space_Phe_space_;
  R03460 = R03460.kf*Shikimate_space_3_minus_phosphate - R03460.kb*_space_5_minus_O_minus__space_1_minus_Carboxyvinyl_space__minus_3_minus_phosphoshikimate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_5_space_1_space_19.sbmlRole="species";
  E2_space_5_space_1_space_19.sbmlCompartment="uVol";
  E6_space_1_space_1_space_20.sbmlRole="species";
  E6_space_1_space_1_space_20.sbmlCompartment="uVol";
  E2_space_6_space_1_space_1.sbmlRole="species";
  E2_space_6_space_1_space_1.sbmlCompartment="uVol";
  E6_space_1_space_1_space_1.sbmlRole="species";
  E6_space_1_space_1_space_1.sbmlCompartment="uVol";
  Shikimate_space_3_minus_phosphate.sbmlRole="species";
  Shikimate_space_3_minus_phosphate.sbmlCompartment="uVol";
  xxx_space_5_minus_O_minus__space_1_minus_Carboxyvinyl_space__minus_3_minus_phosphoshikimate.sbmlRole="species";
  xxx_space_5_minus_O_minus__space_1_minus_Carboxyvinyl_space__minus_3_minus_phosphoshikimate.sbmlName="_space_5_minus_O_minus__space_1_minus_Carboxyvinyl_space__minus_3_minus_phosphoshikimate";
  xxx_space_5_minus_O_minus__space_1_minus_Carboxyvinyl_space__minus_3_minus_phosphoshikimate.sbmlCompartment="uVol";
  L_minus_Phenylalanyl_minus_tRNA_space_Phe_space_.sbmlRole="species";
  L_minus_Phenylalanyl_minus_tRNA_space_Phe_space_.sbmlCompartment="uVol";
  L_minus_Phenylalanine.sbmlRole="species";
  L_minus_Phenylalanine.sbmlCompartment="uVol";
  Phenylpyruvate.sbmlRole="species";
  Phenylpyruvate.sbmlCompartment="uVol";
  L_minus_Tyrosyl_minus_tRNA_space_Tyr_space_.sbmlRole="species";
  L_minus_Tyrosyl_minus_tRNA_space_Tyr_space_.sbmlCompartment="uVol";
  L_minus_Tyrosine.sbmlRole="species";
  L_minus_Tyrosine.sbmlCompartment="uVol";
  xxx_space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate.sbmlRole="species";
  xxx_space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate.sbmlName="_space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate";
  xxx_space_3_minus__space_4_minus_Hydroxyphenyl_space_pyruvate.sbmlCompartment="uVol";
  R00734.sbmlRole="rate";
  R00734.kf.sbmlRole="rate";
  R00734.kb.sbmlRole="rate";
  R02918.sbmlRole="rate";
  R02918.kf.sbmlRole="rate";
  R02918.kb.sbmlRole="rate";
  R00694.sbmlRole="rate";
  R00694.kf.sbmlRole="rate";
  R00694.kb.sbmlRole="rate";
  R03660.sbmlRole="rate";
  R03660.kf.sbmlRole="rate";
  R03660.kb.sbmlRole="rate";
  R03460.sbmlRole="rate";
  R03460.kf.sbmlRole="rate";
  R03460.kb.sbmlRole="rate";
}