// This model generated automatically from SBML
// WARNING: Renamed variable _space_6_minus_Carboxyhexanoyl_minus_CoA to xxx_space_6_minus_Carboxyhexanoyl_minus_CoA due to JSim namespace restrictions
// WARNING: Renamed variable _space_8_minus_Amino_minus_7_minus_oxononanoate to xxx_space_8_minus_Amino_minus_7_minus_oxononanoate due to JSim namespace restrictions
// WARNING: Renamed variable _space_7_space_8_minus_Diaminononanoate to xxx_space_7_space_8_minus_Diaminononanoate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R03231: _space_8_minus_Amino_minus_7_minus_oxononanoate <=> _space_7_space_8_minus_Diaminononanoate 
// R03210: _space_6_minus_Carboxyhexanoyl_minus_CoA <=> _space_8_minus_Amino_minus_7_minus_oxononanoate 
// R03182: _space_7_space_8_minus_Diaminononanoate <=> Dethiobiotin 
// R01078: Dethiobiotin <=> Biotin 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_8_space_1_space_6 = 0 M;
  real E2_space_3_space_1_space_47 = 0 M;
  real E6_space_3_space_3_space_3 = 0 M;
  real E2_space_6_space_1_space_62 = 0 M;
  real xxx_space_6_minus_Carboxyhexanoyl_minus_CoA(time) M;
  real Dethiobiotin(time) M;
  real Biotin(time) M;
  real xxx_space_8_minus_Amino_minus_7_minus_oxononanoate(time) M;
  real xxx_space_7_space_8_minus_Diaminononanoate(time) M;
  real R03231(time) katal;
  extern real R03231.kf;
  extern real R03231.kb;
  real R03210(time) katal;
  extern real R03210.kf;
  extern real R03210.kb;
  real R03182(time) katal;
  extern real R03182.kf;
  extern real R03182.kb;
  real R01078(time) katal;
  extern real R01078.kf;
  extern real R01078.kb;

  // equations
  when (time=time.min) xxx_space_6_minus_Carboxyhexanoyl_minus_CoA = 0;
  (xxx_space_6_minus_Carboxyhexanoyl_minus_CoA*uVol):time = -1*R03210;
  when (time=time.min) Dethiobiotin = 0;
  (Dethiobiotin*uVol):time = R03182 + -1*R01078;
  when (time=time.min) Biotin = 0;
  (Biotin*uVol):time = R01078;
  when (time=time.min) xxx_space_8_minus_Amino_minus_7_minus_oxononanoate = 0;
  (xxx_space_8_minus_Amino_minus_7_minus_oxononanoate*uVol):time = -1*R03231 + R03210;
  when (time=time.min) xxx_space_7_space_8_minus_Diaminononanoate = 0;
  (xxx_space_7_space_8_minus_Diaminononanoate*uVol):time = R03231 + -1*R03182;
  R03231 = R03231.kf*_space_8_minus_Amino_minus_7_minus_oxononanoate - R03231.kb*_space_7_space_8_minus_Diaminononanoate;
  R03210 = R03210.kf*_space_6_minus_Carboxyhexanoyl_minus_CoA - R03210.kb*_space_8_minus_Amino_minus_7_minus_oxononanoate;
  R03182 = R03182.kf*_space_7_space_8_minus_Diaminononanoate - R03182.kb*Dethiobiotin;
  R01078 = R01078.kf*Dethiobiotin - R01078.kb*Biotin;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_8_space_1_space_6.sbmlRole="species";
  E2_space_8_space_1_space_6.sbmlCompartment="uVol";
  E2_space_3_space_1_space_47.sbmlRole="species";
  E2_space_3_space_1_space_47.sbmlCompartment="uVol";
  E6_space_3_space_3_space_3.sbmlRole="species";
  E6_space_3_space_3_space_3.sbmlCompartment="uVol";
  E2_space_6_space_1_space_62.sbmlRole="species";
  E2_space_6_space_1_space_62.sbmlCompartment="uVol";
  xxx_space_6_minus_Carboxyhexanoyl_minus_CoA.sbmlRole="species";
  xxx_space_6_minus_Carboxyhexanoyl_minus_CoA.sbmlName="_space_6_minus_Carboxyhexanoyl_minus_CoA";
  xxx_space_6_minus_Carboxyhexanoyl_minus_CoA.sbmlCompartment="uVol";
  Dethiobiotin.sbmlRole="species";
  Dethiobiotin.sbmlCompartment="uVol";
  Biotin.sbmlRole="species";
  Biotin.sbmlCompartment="uVol";
  xxx_space_8_minus_Amino_minus_7_minus_oxononanoate.sbmlRole="species";
  xxx_space_8_minus_Amino_minus_7_minus_oxononanoate.sbmlName="_space_8_minus_Amino_minus_7_minus_oxononanoate";
  xxx_space_8_minus_Amino_minus_7_minus_oxononanoate.sbmlCompartment="uVol";
  xxx_space_7_space_8_minus_Diaminononanoate.sbmlRole="species";
  xxx_space_7_space_8_minus_Diaminononanoate.sbmlName="_space_7_space_8_minus_Diaminononanoate";
  xxx_space_7_space_8_minus_Diaminononanoate.sbmlCompartment="uVol";
  R03231.sbmlRole="rate";
  R03231.kf.sbmlRole="rate";
  R03231.kb.sbmlRole="rate";
  R03210.sbmlRole="rate";
  R03210.kf.sbmlRole="rate";
  R03210.kb.sbmlRole="rate";
  R03182.sbmlRole="rate";
  R03182.kf.sbmlRole="rate";
  R03182.kb.sbmlRole="rate";
  R01078.sbmlRole="rate";
  R01078.kf.sbmlRole="rate";
  R01078.kb.sbmlRole="rate";
}