// This model generated automatically from SBML
// WARNING: Renamed variable _space_3_minus_Sulfinylpyruvate to xxx_space_3_minus_Sulfinylpyruvate due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus_Sulfino_minus_L_minus_alanine to xxx_space_3_minus_Sulfino_minus_L_minus_alanine due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus_Sulfopyruvate to xxx_space_3_minus_Sulfopyruvate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R02433: L_minus_Cysteate => _space_3_minus_Sulfopyruvate 
// R03650: L_minus_Cysteine <=> L_minus_Cysteinyl_minus_tRNA_space_Cys_space_ 
// R03132: O_minus_Acetyl_minus_L_minus_serine Thiosulfate <=> S_minus_Sulfo_minus_L_minus_cysteine 
// R00782: L_minus_Cysteine <=> Pyruvate 
// R00897: O_minus_Acetyl_minus_L_minus_serine Hydrogen_space_sulfide <=> L_minus_Cysteine 
// R00896: L_minus_Cysteine <=> Mercaptopyruvate 
// R00586: L_minus_Serine => O_minus_Acetyl_minus_L_minus_serine 
// R02408: L_minus_Cystine <=> Thiocysteine 
// R04859: O_minus_Acetyl_minus_L_minus_serine <=> L_minus_Cysteine 
// R02619: _space_3_minus_Sulfinylpyruvate <=> _space_3_minus_Sulfino_minus_L_minus_alanine 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_6_space_1_space_1 = 0 M;
  real E4_space_4_space_1_space_1 = 0 M;
  real E2_space_5_space_1_space_48 = 0 M;
  real E2_space_5_space_1_space_47 = 0 M;
  real E2_space_3_space_1_space_30 = 0 M;
  real E2_space_5_space_1_space_49 = 0 M;
  real E6_space_1_space_1_space_16 = 0 M;
  real Thiocysteine(time) M;
  real Mercaptopyruvate(time) M;
  real L_minus_Cysteine(time) M;
  real L_minus_Cystine(time) M;
  real Pyruvate(time) M;
  real S_minus_Sulfo_minus_L_minus_cysteine(time) M;
  real xxx_space_3_minus_Sulfinylpyruvate(time) M;
  real Thiosulfate(time) M;
  real xxx_space_3_minus_Sulfino_minus_L_minus_alanine(time) M;
  real Hydrogen_space_sulfide(time) M;
  real O_minus_Acetyl_minus_L_minus_serine(time) M;
  real L_minus_Serine(time) M;
  real L_minus_Cysteinyl_minus_tRNA_space_Cys_space_(time) M;
  real L_minus_Cysteate(time) M;
  real xxx_space_3_minus_Sulfopyruvate(time) M;
  real R02433(time) katal;
  extern real R02433.kf;
  extern real R02433.kb;
  real R03650(time) katal;
  extern real R03650.kf;
  extern real R03650.kb;
  real R03132(time) katal;
  extern real R03132.kf;
  extern real R03132.kb;
  real R00782(time) katal;
  extern real R00782.kf;
  extern real R00782.kb;
  real R00897(time) katal;
  extern real R00897.kf;
  extern real R00897.kb;
  real R00896(time) katal;
  extern real R00896.kf;
  extern real R00896.kb;
  real R00586(time) katal;
  extern real R00586.kf;
  extern real R00586.kb;
  real R02408(time) katal;
  extern real R02408.kf;
  extern real R02408.kb;
  real R04859(time) katal;
  extern real R04859.kf;
  extern real R04859.kb;
  real R02619(time) katal;
  extern real R02619.kf;
  extern real R02619.kb;

  // equations
  when (time=time.min) Thiocysteine = 0;
  (Thiocysteine*uVol):time = R02408;
  when (time=time.min) Mercaptopyruvate = 0;
  (Mercaptopyruvate*uVol):time = R00896;
  when (time=time.min) L_minus_Cysteine = 0;
  (L_minus_Cysteine*uVol):time = -1*R03650 + -1*R00782 + R00897 + -1*R00896 + R04859;
  when (time=time.min) L_minus_Cystine = 0;
  (L_minus_Cystine*uVol):time = -1*R02408;
  when (time=time.min) Pyruvate = 0;
  (Pyruvate*uVol):time = R00782;
  when (time=time.min) S_minus_Sulfo_minus_L_minus_cysteine = 0;
  (S_minus_Sulfo_minus_L_minus_cysteine*uVol):time = R03132;
  when (time=time.min) xxx_space_3_minus_Sulfinylpyruvate = 0;
  (xxx_space_3_minus_Sulfinylpyruvate*uVol):time = -1*R02619;
  when (time=time.min) Thiosulfate = 0;
  (Thiosulfate*uVol):time = -1*R03132;
  when (time=time.min) xxx_space_3_minus_Sulfino_minus_L_minus_alanine = 0;
  (xxx_space_3_minus_Sulfino_minus_L_minus_alanine*uVol):time = R02619;
  when (time=time.min) Hydrogen_space_sulfide = 0;
  (Hydrogen_space_sulfide*uVol):time = -1*R00897;
  when (time=time.min) O_minus_Acetyl_minus_L_minus_serine = 0;
  (O_minus_Acetyl_minus_L_minus_serine*uVol):time = -1*R03132 + -1*R00897 + R00586 + -1*R04859;
  when (time=time.min) L_minus_Serine = 0;
  (L_minus_Serine*uVol):time = -1*R00586;
  when (time=time.min) L_minus_Cysteinyl_minus_tRNA_space_Cys_space_ = 0;
  (L_minus_Cysteinyl_minus_tRNA_space_Cys_space_*uVol):time = R03650;
  when (time=time.min) L_minus_Cysteate = 0;
  (L_minus_Cysteate*uVol):time = -1*R02433;
  when (time=time.min) xxx_space_3_minus_Sulfopyruvate = 0;
  (xxx_space_3_minus_Sulfopyruvate*uVol):time = R02433;
  R02433 = R02433.kf*L_minus_Cysteate - R02433.kb*_space_3_minus_Sulfopyruvate;
  R03650 = R03650.kf*L_minus_Cysteine - R03650.kb*L_minus_Cysteinyl_minus_tRNA_space_Cys_space_;
  R03132 = R03132.kf*O_minus_Acetyl_minus_L_minus_serine*Thiosulfate - R03132.kb*S_minus_Sulfo_minus_L_minus_cysteine;
  R00782 = R00782.kf*L_minus_Cysteine - R00782.kb*Pyruvate;
  R00897 = R00897.kf*O_minus_Acetyl_minus_L_minus_serine*Hydrogen_space_sulfide - R00897.kb*L_minus_Cysteine;
  R00896 = R00896.kf*L_minus_Cysteine - R00896.kb*Mercaptopyruvate;
  R00586 = R00586.kf*L_minus_Serine - R00586.kb*O_minus_Acetyl_minus_L_minus_serine;
  R02408 = R02408.kf*L_minus_Cystine - R02408.kb*Thiocysteine;
  R04859 = R04859.kf*O_minus_Acetyl_minus_L_minus_serine - R04859.kb*L_minus_Cysteine;
  R02619 = R02619.kf*_space_3_minus_Sulfinylpyruvate - R02619.kb*_space_3_minus_Sulfino_minus_L_minus_alanine;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_6_space_1_space_1.sbmlRole="species";
  E2_space_6_space_1_space_1.sbmlCompartment="uVol";
  E4_space_4_space_1_space_1.sbmlRole="species";
  E4_space_4_space_1_space_1.sbmlCompartment="uVol";
  E2_space_5_space_1_space_48.sbmlRole="species";
  E2_space_5_space_1_space_48.sbmlCompartment="uVol";
  E2_space_5_space_1_space_47.sbmlRole="species";
  E2_space_5_space_1_space_47.sbmlCompartment="uVol";
  E2_space_3_space_1_space_30.sbmlRole="species";
  E2_space_3_space_1_space_30.sbmlCompartment="uVol";
  E2_space_5_space_1_space_49.sbmlRole="species";
  E2_space_5_space_1_space_49.sbmlCompartment="uVol";
  E6_space_1_space_1_space_16.sbmlRole="species";
  E6_space_1_space_1_space_16.sbmlCompartment="uVol";
  Thiocysteine.sbmlRole="species";
  Thiocysteine.sbmlCompartment="uVol";
  Mercaptopyruvate.sbmlRole="species";
  Mercaptopyruvate.sbmlCompartment="uVol";
  L_minus_Cysteine.sbmlRole="species";
  L_minus_Cysteine.sbmlCompartment="uVol";
  L_minus_Cystine.sbmlRole="species";
  L_minus_Cystine.sbmlCompartment="uVol";
  Pyruvate.sbmlRole="species";
  Pyruvate.sbmlCompartment="uVol";
  S_minus_Sulfo_minus_L_minus_cysteine.sbmlRole="species";
  S_minus_Sulfo_minus_L_minus_cysteine.sbmlCompartment="uVol";
  xxx_space_3_minus_Sulfinylpyruvate.sbmlRole="species";
  xxx_space_3_minus_Sulfinylpyruvate.sbmlName="_space_3_minus_Sulfinylpyruvate";
  xxx_space_3_minus_Sulfinylpyruvate.sbmlCompartment="uVol";
  Thiosulfate.sbmlRole="species";
  Thiosulfate.sbmlCompartment="uVol";
  xxx_space_3_minus_Sulfino_minus_L_minus_alanine.sbmlRole="species";
  xxx_space_3_minus_Sulfino_minus_L_minus_alanine.sbmlName="_space_3_minus_Sulfino_minus_L_minus_alanine";
  xxx_space_3_minus_Sulfino_minus_L_minus_alanine.sbmlCompartment="uVol";
  Hydrogen_space_sulfide.sbmlRole="species";
  Hydrogen_space_sulfide.sbmlCompartment="uVol";
  O_minus_Acetyl_minus_L_minus_serine.sbmlRole="species";
  O_minus_Acetyl_minus_L_minus_serine.sbmlCompartment="uVol";
  L_minus_Serine.sbmlRole="species";
  L_minus_Serine.sbmlCompartment="uVol";
  L_minus_Cysteinyl_minus_tRNA_space_Cys_space_.sbmlRole="species";
  L_minus_Cysteinyl_minus_tRNA_space_Cys_space_.sbmlCompartment="uVol";
  L_minus_Cysteate.sbmlRole="species";
  L_minus_Cysteate.sbmlCompartment="uVol";
  xxx_space_3_minus_Sulfopyruvate.sbmlRole="species";
  xxx_space_3_minus_Sulfopyruvate.sbmlName="_space_3_minus_Sulfopyruvate";
  xxx_space_3_minus_Sulfopyruvate.sbmlCompartment="uVol";
  R02433.sbmlRole="rate";
  R02433.kf.sbmlRole="rate";
  R02433.kb.sbmlRole="rate";
  R03650.sbmlRole="rate";
  R03650.kf.sbmlRole="rate";
  R03650.kb.sbmlRole="rate";
  R03132.sbmlRole="rate";
  R03132.kf.sbmlRole="rate";
  R03132.kb.sbmlRole="rate";
  R00782.sbmlRole="rate";
  R00782.kf.sbmlRole="rate";
  R00782.kb.sbmlRole="rate";
  R00897.sbmlRole="rate";
  R00897.kf.sbmlRole="rate";
  R00897.kb.sbmlRole="rate";
  R00896.sbmlRole="rate";
  R00896.kf.sbmlRole="rate";
  R00896.kb.sbmlRole="rate";
  R00586.sbmlRole="rate";
  R00586.kf.sbmlRole="rate";
  R00586.kb.sbmlRole="rate";
  R02408.sbmlRole="rate";
  R02408.kf.sbmlRole="rate";
  R02408.kb.sbmlRole="rate";
  R04859.sbmlRole="rate";
  R04859.kf.sbmlRole="rate";
  R04859.kb.sbmlRole="rate";
  R02619.sbmlRole="rate";
  R02619.kf.sbmlRole="rate";
  R02619.kb.sbmlRole="rate";
}