// This model generated automatically from SBML
// WARNING: Renamed variable _space_2_minus_Hydroxy_minus_2_space_4_minus_pentadienoate to xxx_space_2_minus_Hydroxy_minus_2_space_4_minus_pentadienoate due to JSim namespace restrictions
// WARNING: Renamed variable _space_4_minus_Hydroxy_minus_2_minus_oxopentanoate to xxx_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R05506: Benzoyl_space_acetyl_minus_CoA <=> S_minus_Benzoate_space_coenzyme_space_A Acetyl_minus_CoA 
// R00750: Acetaldehyde Pyruvate <=> _space_4_minus_Hydroxy_minus_2_minus_oxopentanoate 
// R02601: _space_2_minus_Hydroxy_minus_2_space_4_minus_pentadienoate <=> _space_4_minus_Hydroxy_minus_2_minus_oxopentanoate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E4_space_2_space_1_space_80 = 0 M;
  real E4_space_1_space_3_space_39 = 0 M;
  real E2_space_3_space_1_space_16 = 0 M;
  real Acetaldehyde(time) M;
  real xxx_space_2_minus_Hydroxy_minus_2_space_4_minus_pentadienoate(time) M;
  real xxx_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate(time) M;
  real Pyruvate(time) M;
  real S_minus_Benzoate_space_coenzyme_space_A(time) M;
  real Benzoyl_space_acetyl_minus_CoA(time) M;
  real Acetyl_minus_CoA(time) M;
  real R05506(time) katal;
  extern real R05506.kf;
  extern real R05506.kb;
  real R00750(time) katal;
  extern real R00750.kf;
  extern real R00750.kb;
  real R02601(time) katal;
  extern real R02601.kf;
  extern real R02601.kb;

  // equations
  when (time=time.min) Acetaldehyde = 0;
  (Acetaldehyde*uVol):time = -1*R00750;
  when (time=time.min) xxx_space_2_minus_Hydroxy_minus_2_space_4_minus_pentadienoate = 0;
  (xxx_space_2_minus_Hydroxy_minus_2_space_4_minus_pentadienoate*uVol):time = -1*R02601;
  when (time=time.min) xxx_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate = 0;
  (xxx_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate*uVol):time = R00750 + R02601;
  when (time=time.min) Pyruvate = 0;
  (Pyruvate*uVol):time = -1*R00750;
  when (time=time.min) S_minus_Benzoate_space_coenzyme_space_A = 0;
  (S_minus_Benzoate_space_coenzyme_space_A*uVol):time = R05506;
  when (time=time.min) Benzoyl_space_acetyl_minus_CoA = 0;
  (Benzoyl_space_acetyl_minus_CoA*uVol):time = -1*R05506;
  when (time=time.min) Acetyl_minus_CoA = 0;
  (Acetyl_minus_CoA*uVol):time = R05506;
  R05506 = R05506.kf*Benzoyl_space_acetyl_minus_CoA - R05506.kb*S_minus_Benzoate_space_coenzyme_space_A*Acetyl_minus_CoA;
  R00750 = R00750.kf*Acetaldehyde*Pyruvate - R00750.kb*_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate;
  R02601 = R02601.kf*_space_2_minus_Hydroxy_minus_2_space_4_minus_pentadienoate - R02601.kb*_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E4_space_2_space_1_space_80.sbmlRole="species";
  E4_space_2_space_1_space_80.sbmlCompartment="uVol";
  E4_space_1_space_3_space_39.sbmlRole="species";
  E4_space_1_space_3_space_39.sbmlCompartment="uVol";
  E2_space_3_space_1_space_16.sbmlRole="species";
  E2_space_3_space_1_space_16.sbmlCompartment="uVol";
  Acetaldehyde.sbmlRole="species";
  Acetaldehyde.sbmlCompartment="uVol";
  xxx_space_2_minus_Hydroxy_minus_2_space_4_minus_pentadienoate.sbmlRole="species";
  xxx_space_2_minus_Hydroxy_minus_2_space_4_minus_pentadienoate.sbmlName="_space_2_minus_Hydroxy_minus_2_space_4_minus_pentadienoate";
  xxx_space_2_minus_Hydroxy_minus_2_space_4_minus_pentadienoate.sbmlCompartment="uVol";
  xxx_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate.sbmlRole="species";
  xxx_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate.sbmlName="_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate";
  xxx_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate.sbmlCompartment="uVol";
  Pyruvate.sbmlRole="species";
  Pyruvate.sbmlCompartment="uVol";
  S_minus_Benzoate_space_coenzyme_space_A.sbmlRole="species";
  S_minus_Benzoate_space_coenzyme_space_A.sbmlCompartment="uVol";
  Benzoyl_space_acetyl_minus_CoA.sbmlRole="species";
  Benzoyl_space_acetyl_minus_CoA.sbmlCompartment="uVol";
  Acetyl_minus_CoA.sbmlRole="species";
  Acetyl_minus_CoA.sbmlCompartment="uVol";
  R05506.sbmlRole="rate";
  R05506.kf.sbmlRole="rate";
  R05506.kb.sbmlRole="rate";
  R00750.sbmlRole="rate";
  R00750.kf.sbmlRole="rate";
  R00750.kb.sbmlRole="rate";
  R02601.sbmlRole="rate";
  R02601.kf.sbmlRole="rate";
  R02601.kb.sbmlRole="rate";
}