// This model generated automatically from SBML
// WARNING: Renamed variable _space_2_minus_Oxobutanoate to xxx_space_2_minus_Oxobutanoate due to JSim namespace restrictions
// WARNING: Renamed variable _space_S_space__minus_2_minus_Aceto_minus_2_minus_hydroxybutanoate to xxx_space_S_space__minus_2_minus_Aceto_minus_2_minus_hydroxybutanoate due to JSim namespace restrictions
// WARNING: Renamed variable _space_R_space__minus_3_minus_Hydroxy_minus_3_minus_methyl_minus_2_minus_oxopentanoate to xxx_space_R_space__minus_3_minus_Hydroxy_minus_3_minus_methyl_minus_2_minus_oxopentanoate due to JSim namespace restrictions
// WARNING: Renamed variable _space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylpentanoate to xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylpentanoate due to JSim namespace restrictions
// WARNING: Renamed variable _space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid to xxx_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_Methylmaleate to xxx_space_2_minus_Methylmaleate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate to xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate due to JSim namespace restrictions
// WARNING: Renamed variable _space_S_space__minus_2_minus_Acetolactate to xxx_space_S_space__minus_2_minus_Acetolactate due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus_Hydroxy_minus_3_minus_methyl_minus_2_minus_oxobutanoic_space_acid to xxx_space_3_minus_Hydroxy_minus_3_minus_methyl_minus_2_minus_oxobutanoic_space_acid due to JSim namespace restrictions
// WARNING: Renamed variable _space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylbutanoate to xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylbutanoate due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid to xxx_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid due to JSim namespace restrictions
// WARNING: Renamed variable _space_R_space__minus_2_minus_Methylmalate to xxx_space_R_space__minus_2_minus_Methylmalate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2S_space__minus_2_minus_Isopropylmalate to xxx_space_2S_space__minus_2_minus_Isopropylmalate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_Isopropylmaleate to xxx_space_2_minus_Isopropylmaleate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2R_space_3S_space__minus_3_minus_Isopropylmalate to xxx_space_2R_space_3S_space__minus_3_minus_Isopropylmalate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2S_space__minus_2_minus_Isopropyl_minus_3_minus_oxosuccinate to xxx_space_2S_space__minus_2_minus_Isopropyl_minus_3_minus_oxosuccinate due to JSim namespace restrictions
// WARNING: Renamed variable _space_4_minus_Methyl_minus_2_minus_oxopentanoate to xxx_space_4_minus_Methyl_minus_2_minus_oxopentanoate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R03896: _space_R_space__minus_2_minus_Methylmalate <=> _space_2_minus_Methylmaleate 
// R05071: _space_S_space__minus_2_minus_Acetolactate => _space_3_minus_Hydroxy_minus_3_minus_methyl_minus_2_minus_oxobutanoic_space_acid 
// R03657: L_minus_Leucine <=> L_minus_Leucyl_minus_tRNA 
// R04001: _space_2R_space_3S_space__minus_3_minus_Isopropylmalate => _space_2_minus_Isopropylmaleate 
// R01213: _space_2S_space__minus_2_minus_Isopropylmalate <=> _space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid 
// R00994: _space_2_minus_Oxobutanoate <=> D_minus_erythro_minus_3_minus_Methylmalate 
// R02199: L_minus_Isoleucine <=> _space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid 
// R03656: L_minus_Isoleucine <=> L_minus_Isoleucyl_minus_tRNA_space_Ile_space_ 
// R04441: _space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylbutanoate <=> _space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid 
// R04672: _space_S_space__minus_2_minus_Acetolactate <=> _space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate 
// R04440: _space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylbutanoate => _space_3_minus_Hydroxy_minus_3_minus_methyl_minus_2_minus_oxobutanoic_space_acid 
// R01214: L_minus_Valine <=> _space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid 
// R03898: _space_2_minus_Methylmaleate <=> D_minus_erythro_minus_3_minus_Methylmalate 
// R04673: _space_2_minus_Oxobutanoate _space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate <=> _space_S_space__minus_2_minus_Aceto_minus_2_minus_hydroxybutanoate 
// R01090: L_minus_Leucine => _space_4_minus_Methyl_minus_2_minus_oxopentanoate 
// R05070: _space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylpentanoate <=> _space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid 
// R00014: Pyruvate <=> _space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate 
// R03665: L_minus_Valine <=> L_minus_Valyl_minus_tRNA_space_Val_space_ 
// R00996: L_minus_Threonine <=> _space_2_minus_Oxobutanoate 
// R04426: _space_2R_space_3S_space__minus_3_minus_Isopropylmalate => _space_2S_space__minus_2_minus_Isopropyl_minus_3_minus_oxosuccinate 
// R05069: _space_S_space__minus_2_minus_Aceto_minus_2_minus_hydroxybutanoate => _space_R_space__minus_3_minus_Hydroxy_minus_3_minus_methyl_minus_2_minus_oxopentanoate 
// R03968: _space_2S_space__minus_2_minus_Isopropylmalate => _space_2_minus_Isopropylmaleate 
// R05068: _space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylpentanoate => _space_R_space__minus_3_minus_Hydroxy_minus_3_minus_methyl_minus_2_minus_oxopentanoate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E1_space_1_space_1_space_86 = 0 M;
  real E2_space_6_space_1_space_42 = 0 M;
  real E1_space_1_space_1_space_85 = 0 M;
  real E2_space_2_space_1_space_6 = 0 M;
  real E4_space_2_space_1_space_9 = 0 M;
  real E6_space_1_space_1_space_5 = 0 M;
  real E4_space_2_space_1_space_33 = 0 M;
  real E6_space_1_space_1_space_9 = 0 M;
  real E2_space_3_space_3_space_13 = 0 M;
  real E1_space_2_space_4_space_1 = 0 M;
  real E6_space_1_space_1_space_4 = 0 M;
  real E4_space_3_space_1_space_19 = 0 M;
  real xxx_space_2_minus_Oxobutanoate(time) M;
  real xxx_space_S_space__minus_2_minus_Aceto_minus_2_minus_hydroxybutanoate(time) M;
  real xxx_space_R_space__minus_3_minus_Hydroxy_minus_3_minus_methyl_minus_2_minus_oxopentanoate(time) M;
  real xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylpentanoate(time) M;
  real xxx_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid(time) M;
  real L_minus_Isoleucine(time) M;
  real L_minus_Isoleucyl_minus_tRNA_space_Ile_space_(time) M;
  real D_minus_erythro_minus_3_minus_Methylmalate(time) M;
  real xxx_space_2_minus_Methylmaleate(time) M;
  real xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate(time) M;
  real xxx_space_S_space__minus_2_minus_Acetolactate(time) M;
  real xxx_space_3_minus_Hydroxy_minus_3_minus_methyl_minus_2_minus_oxobutanoic_space_acid(time) M;
  real xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylbutanoate(time) M;
  real xxx_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid(time) M;
  real L_minus_Valine(time) M;
  real L_minus_Valyl_minus_tRNA_space_Val_space_(time) M;
  real xxx_space_R_space__minus_2_minus_Methylmalate(time) M;
  real Pyruvate(time) M;
  real xxx_space_2S_space__minus_2_minus_Isopropylmalate(time) M;
  real xxx_space_2_minus_Isopropylmaleate(time) M;
  real xxx_space_2R_space_3S_space__minus_3_minus_Isopropylmalate(time) M;
  real xxx_space_2S_space__minus_2_minus_Isopropyl_minus_3_minus_oxosuccinate(time) M;
  real xxx_space_4_minus_Methyl_minus_2_minus_oxopentanoate(time) M;
  real L_minus_Leucine(time) M;
  real L_minus_Leucyl_minus_tRNA(time) M;
  real L_minus_Threonine(time) M;
  real R03896(time) katal;
  extern real R03896.kf;
  extern real R03896.kb;
  real R05071(time) katal;
  extern real R05071.kf;
  extern real R05071.kb;
  real R03657(time) katal;
  extern real R03657.kf;
  extern real R03657.kb;
  real R04001(time) katal;
  extern real R04001.kf;
  extern real R04001.kb;
  real R01213(time) katal;
  extern real R01213.kf;
  extern real R01213.kb;
  real R00994(time) katal;
  extern real R00994.kf;
  extern real R00994.kb;
  real R02199(time) katal;
  extern real R02199.kf;
  extern real R02199.kb;
  real R03656(time) katal;
  extern real R03656.kf;
  extern real R03656.kb;
  real R04441(time) katal;
  extern real R04441.kf;
  extern real R04441.kb;
  real R04672(time) katal;
  extern real R04672.kf;
  extern real R04672.kb;
  real R04440(time) katal;
  extern real R04440.kf;
  extern real R04440.kb;
  real R01214(time) katal;
  extern real R01214.kf;
  extern real R01214.kb;
  real R03898(time) katal;
  extern real R03898.kf;
  extern real R03898.kb;
  real R04673(time) katal;
  extern real R04673.kf;
  extern real R04673.kb;
  real R01090(time) katal;
  extern real R01090.kf;
  extern real R01090.kb;
  real R05070(time) katal;
  extern real R05070.kf;
  extern real R05070.kb;
  real R00014(time) katal;
  extern real R00014.kf;
  extern real R00014.kb;
  real R03665(time) katal;
  extern real R03665.kf;
  extern real R03665.kb;
  real R00996(time) katal;
  extern real R00996.kf;
  extern real R00996.kb;
  real R04426(time) katal;
  extern real R04426.kf;
  extern real R04426.kb;
  real R05069(time) katal;
  extern real R05069.kf;
  extern real R05069.kb;
  real R03968(time) katal;
  extern real R03968.kf;
  extern real R03968.kb;
  real R05068(time) katal;
  extern real R05068.kf;
  extern real R05068.kb;

  // equations
  when (time=time.min) xxx_space_2_minus_Oxobutanoate = 0;
  (xxx_space_2_minus_Oxobutanoate*uVol):time = -1*R00994 + -1*R04673 + R00996;
  when (time=time.min) xxx_space_S_space__minus_2_minus_Aceto_minus_2_minus_hydroxybutanoate = 0;
  (xxx_space_S_space__minus_2_minus_Aceto_minus_2_minus_hydroxybutanoate*uVol):time = R04673 + -1*R05069;
  when (time=time.min) xxx_space_R_space__minus_3_minus_Hydroxy_minus_3_minus_methyl_minus_2_minus_oxopentanoate = 0;
  (xxx_space_R_space__minus_3_minus_Hydroxy_minus_3_minus_methyl_minus_2_minus_oxopentanoate*uVol):time = R05069 + R05068;
  when (time=time.min) xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylpentanoate = 0;
  (xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylpentanoate*uVol):time = -1*R05070 + -1*R05068;
  when (time=time.min) xxx_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid = 0;
  (xxx_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid*uVol):time = R02199 + R05070;
  when (time=time.min) L_minus_Isoleucine = 0;
  (L_minus_Isoleucine*uVol):time = -1*R02199 + -1*R03656;
  when (time=time.min) L_minus_Isoleucyl_minus_tRNA_space_Ile_space_ = 0;
  (L_minus_Isoleucyl_minus_tRNA_space_Ile_space_*uVol):time = R03656;
  when (time=time.min) D_minus_erythro_minus_3_minus_Methylmalate = 0;
  (D_minus_erythro_minus_3_minus_Methylmalate*uVol):time = R00994 + R03898;
  when (time=time.min) xxx_space_2_minus_Methylmaleate = 0;
  (xxx_space_2_minus_Methylmaleate*uVol):time = R03896 + -1*R03898;
  when (time=time.min) xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate = 0;
  (xxx_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate*uVol):time = R04672 + -1*R04673 + R00014;
  when (time=time.min) xxx_space_S_space__minus_2_minus_Acetolactate = 0;
  (xxx_space_S_space__minus_2_minus_Acetolactate*uVol):time = -1*R05071 + -1*R04672;
  when (time=time.min) xxx_space_3_minus_Hydroxy_minus_3_minus_methyl_minus_2_minus_oxobutanoic_space_acid = 0;
  (xxx_space_3_minus_Hydroxy_minus_3_minus_methyl_minus_2_minus_oxobutanoic_space_acid*uVol):time = R05071 + R04440;
  when (time=time.min) xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylbutanoate = 0;
  (xxx_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylbutanoate*uVol):time = -1*R04441 + -1*R04440;
  when (time=time.min) xxx_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid = 0;
  (xxx_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid*uVol):time = R01213 + R04441 + R01214;
  when (time=time.min) L_minus_Valine = 0;
  (L_minus_Valine*uVol):time = -1*R01214 + -1*R03665;
  when (time=time.min) L_minus_Valyl_minus_tRNA_space_Val_space_ = 0;
  (L_minus_Valyl_minus_tRNA_space_Val_space_*uVol):time = R03665;
  when (time=time.min) xxx_space_R_space__minus_2_minus_Methylmalate = 0;
  (xxx_space_R_space__minus_2_minus_Methylmalate*uVol):time = -1*R03896;
  when (time=time.min) Pyruvate = 0;
  (Pyruvate*uVol):time = -1*R00014;
  when (time=time.min) xxx_space_2S_space__minus_2_minus_Isopropylmalate = 0;
  (xxx_space_2S_space__minus_2_minus_Isopropylmalate*uVol):time = -1*R01213 + -1*R03968;
  when (time=time.min) xxx_space_2_minus_Isopropylmaleate = 0;
  (xxx_space_2_minus_Isopropylmaleate*uVol):time = R04001 + R03968;
  when (time=time.min) xxx_space_2R_space_3S_space__minus_3_minus_Isopropylmalate = 0;
  (xxx_space_2R_space_3S_space__minus_3_minus_Isopropylmalate*uVol):time = -1*R04001 + -1*R04426;
  when (time=time.min) xxx_space_2S_space__minus_2_minus_Isopropyl_minus_3_minus_oxosuccinate = 0;
  (xxx_space_2S_space__minus_2_minus_Isopropyl_minus_3_minus_oxosuccinate*uVol):time = R04426;
  when (time=time.min) xxx_space_4_minus_Methyl_minus_2_minus_oxopentanoate = 0;
  (xxx_space_4_minus_Methyl_minus_2_minus_oxopentanoate*uVol):time = R01090;
  when (time=time.min) L_minus_Leucine = 0;
  (L_minus_Leucine*uVol):time = -1*R03657 + -1*R01090;
  when (time=time.min) L_minus_Leucyl_minus_tRNA = 0;
  (L_minus_Leucyl_minus_tRNA*uVol):time = R03657;
  when (time=time.min) L_minus_Threonine = 0;
  (L_minus_Threonine*uVol):time = -1*R00996;
  R03896 = R03896.kf*_space_R_space__minus_2_minus_Methylmalate - R03896.kb*_space_2_minus_Methylmaleate;
  R05071 = R05071.kf*_space_S_space__minus_2_minus_Acetolactate - R05071.kb*_space_3_minus_Hydroxy_minus_3_minus_methyl_minus_2_minus_oxobutanoic_space_acid;
  R03657 = R03657.kf*L_minus_Leucine - R03657.kb*L_minus_Leucyl_minus_tRNA;
  R04001 = R04001.kf*_space_2R_space_3S_space__minus_3_minus_Isopropylmalate - R04001.kb*_space_2_minus_Isopropylmaleate;
  R01213 = R01213.kf*_space_2S_space__minus_2_minus_Isopropylmalate - R01213.kb*_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid;
  R00994 = R00994.kf*_space_2_minus_Oxobutanoate - R00994.kb*D_minus_erythro_minus_3_minus_Methylmalate;
  R02199 = R02199.kf*L_minus_Isoleucine - R02199.kb*_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid;
  R03656 = R03656.kf*L_minus_Isoleucine - R03656.kb*L_minus_Isoleucyl_minus_tRNA_space_Ile_space_;
  R04441 = R04441.kf*_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylbutanoate - R04441.kb*_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid;
  R04672 = R04672.kf*_space_S_space__minus_2_minus_Acetolactate - R04672.kb*_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate;
  R04440 = R04440.kf*_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylbutanoate - R04440.kb*_space_3_minus_Hydroxy_minus_3_minus_methyl_minus_2_minus_oxobutanoic_space_acid;
  R01214 = R01214.kf*L_minus_Valine - R01214.kb*_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid;
  R03898 = R03898.kf*_space_2_minus_Methylmaleate - R03898.kb*D_minus_erythro_minus_3_minus_Methylmalate;
  R04673 = R04673.kf*_space_2_minus_Oxobutanoate*_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate - R04673.kb*_space_S_space__minus_2_minus_Aceto_minus_2_minus_hydroxybutanoate;
  R01090 = R01090.kf*L_minus_Leucine - R01090.kb*_space_4_minus_Methyl_minus_2_minus_oxopentanoate;
  R05070 = R05070.kf*_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylpentanoate - R05070.kb*_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid;
  R00014 = R00014.kf*Pyruvate - R00014.kb*_space_2_minus__space__alpha__minus_Hydroxyethyl_space_thiamine_space_diphosphate;
  R03665 = R03665.kf*L_minus_Valine - R03665.kb*L_minus_Valyl_minus_tRNA_space_Val_space_;
  R00996 = R00996.kf*L_minus_Threonine - R00996.kb*_space_2_minus_Oxobutanoate;
  R04426 = R04426.kf*_space_2R_space_3S_space__minus_3_minus_Isopropylmalate - R04426.kb*_space_2S_space__minus_2_minus_Isopropyl_minus_3_minus_oxosuccinate;
  R05069 = R05069.kf*_space_S_space__minus_2_minus_Aceto_minus_2_minus_hydroxybutanoate - R05069.kb*_space_R_space__minus_3_minus_Hydroxy_minus_3_minus_methyl_minus_2_minus_oxopentanoate;
  R03968 = R03968.kf*_space_2S_space__minus_2_minus_Isopropylmalate - R03968.kb*_space_2_minus_Isopropylmaleate;
  R05068 = R05068.kf*_space_R_space__minus_2_space_3_minus_Dihydroxy_minus_3_minus_methylpentanoate - R05068.kb*_space_R_space__minus_3_minus_Hydroxy_minus_3_minus_methyl_minus_2_minus_oxopentanoate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E1_space_1_space_1_space_86.sbmlRole="species";
  E1_space_1_space_1_space_86.sbmlCompartment="uVol";
  E2_space_6_space_1_space_42.sbmlRole="species";
  E2_space_6_space_1_space_42.sbmlCompartment="uVol";
  E1_space_1_space_1_space_85.sbmlRole="species";
  E1_space_1_space_1_space_85.sbmlCompartment="uVol";
  E2_space_2_space_1_space_6.sbmlRole="species";
  E2_space_2_space_1_space_6.sbmlCompartment="uVol";
  E4_space_2_space_1_space_9.sbmlRole="species";
  E4_space_2_space_1_space_9.sbmlCompartment="uVol";
  E6_space_1_space_1_space_5.sbmlRole="species";
  E6_space_1_space_1_space_5.sbmlCompartment="uVol";
  E4_space_2_space_1_space_33.sbmlRole="species";
  E4_space_2_space_1_space_33.sbmlCompartment="uVol";
  E6_space_1_space_1_space_9.sbmlRole="species";
  E6_space_1_space_1_space_9.sbmlCompartment="uVol";
  E2_space_3_space_3_space_13.sbmlRole="species";
  E2_space_3_space_3_space_13.sbmlCompartment="uVol";
  E1_space_2_space_4_space_1.sbmlRole="species";
  E1_space_2_space_4_space_1.sbmlCompartment="uVol";
  E6_space_1_space_1_space_4.sbmlRole="species";
  E6_space_1_space_1_space_4.sbmlCompartment="uVol";
  E4_space_3_space_1_space_19.sbmlRole="species";
  E4_space_3_space_1_space_19.sbmlCompartment="uVol";
  xxx_space_2_minus_Oxobutanoate.sbmlRole="species";
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