// This model generated automatically from SBML
// WARNING: Renamed variable _space_3_minus_Hexaprenyl_minus_4_minus_hydroxybenzoate to xxx_space_3_minus_Hexaprenyl_minus_4_minus_hydroxybenzoate due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus_Hexaprenyl_minus_4_space_5_minus_dihydroxybenzoate to xxx_space_3_minus_Hexaprenyl_minus_4_space_5_minus_dihydroxybenzoate due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus_Hexaprenyl_minus_4_minus_hydroxy_minus_5_minus_methoxybenzoate to xxx_space_3_minus_Hexaprenyl_minus_4_minus_hydroxy_minus_5_minus_methoxybenzoate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_Hexaprenyl_minus_6_minus_methoxyphenol to xxx_space_2_minus_Hexaprenyl_minus_6_minus_methoxyphenol due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_Hexaprenyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone to xxx_space_2_minus_Hexaprenyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone to xxx_space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_5_minus_hydroxy_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone to xxx_space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_5_minus_hydroxy_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone due to JSim namespace restrictions
// WARNING: Renamed variable _space_4_minus_Hydroxybenzoate to xxx_space_4_minus_Hydroxybenzoate due to JSim namespace restrictions
// WARNING: Renamed variable _space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate to xxx_space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_Demethylmenaquinone to xxx_space_2_minus_Demethylmenaquinone due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_Phytyl_minus_1_space_4_minus_naphthoquinone to xxx_space_2_minus_Phytyl_minus_1_space_4_minus_naphthoquinone due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R04983: _space_2_minus_Hexaprenyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone <=> _space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone 
// R05617: _space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate => _space_2_minus_Demethylmenaquinone 
// R04984: _space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone <=> _space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_5_minus_hydroxy_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone 
// R04711: _space_3_minus_Hexaprenyl_minus_4_space_5_minus_dihydroxybenzoate <=> _space_3_minus_Hexaprenyl_minus_4_minus_hydroxy_minus_5_minus_methoxybenzoate 
// R04982: _space_2_minus_Hexaprenyl_minus_6_minus_methoxyphenol <=> _space_2_minus_Hexaprenyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone 
// R05616: all_minus_trans_minus_Hexaprenyl_space_diphosphate _space_4_minus_Hydroxybenzoate <=> _space_3_minus_Hexaprenyl_minus_4_minus_hydroxybenzoate 
// R02175: _space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_5_minus_hydroxy_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone <=> Ubiquinone 
// R06858: _space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate <=> _space_2_minus_Phytyl_minus_1_space_4_minus_naphthoquinone 
// R02166: Ubiquinone => Ubiquinol 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E1_space_14_space_13_space__minus_ = 0 M;
  real E2_space_1_space_1_space__minus_ = 0 M;
  real E2_space_1_space_1_space_114 = 0 M;
  real E2_space_5_space_1_space__minus_ = 0 M;
  real E1_space_6_space_5_space_3 = 0 M;
  real all_minus_trans_minus_Hexaprenyl_space_diphosphate(time) M;
  real xxx_space_3_minus_Hexaprenyl_minus_4_minus_hydroxybenzoate(time) M;
  real xxx_space_3_minus_Hexaprenyl_minus_4_space_5_minus_dihydroxybenzoate(time) M;
  real xxx_space_3_minus_Hexaprenyl_minus_4_minus_hydroxy_minus_5_minus_methoxybenzoate(time) M;
  real xxx_space_2_minus_Hexaprenyl_minus_6_minus_methoxyphenol(time) M;
  real xxx_space_2_minus_Hexaprenyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone(time) M;
  real xxx_space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone(time) M;
  real xxx_space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_5_minus_hydroxy_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone(time) M;
  real xxx_space_4_minus_Hydroxybenzoate(time) M;
  real Ubiquinol(time) M;
  real Ubiquinone(time) M;
  real xxx_space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate(time) M;
  real xxx_space_2_minus_Demethylmenaquinone(time) M;
  real xxx_space_2_minus_Phytyl_minus_1_space_4_minus_naphthoquinone(time) M;
  real R04983(time) katal;
  extern real R04983.kf;
  extern real R04983.kb;
  real R05617(time) katal;
  extern real R05617.kf;
  extern real R05617.kb;
  real R04984(time) katal;
  extern real R04984.kf;
  extern real R04984.kb;
  real R04711(time) katal;
  extern real R04711.kf;
  extern real R04711.kb;
  real R04982(time) katal;
  extern real R04982.kf;
  extern real R04982.kb;
  real R05616(time) katal;
  extern real R05616.kf;
  extern real R05616.kb;
  real R02175(time) katal;
  extern real R02175.kf;
  extern real R02175.kb;
  real R06858(time) katal;
  extern real R06858.kf;
  extern real R06858.kb;
  real R02166(time) katal;
  extern real R02166.kf;
  extern real R02166.kb;

  // equations
  when (time=time.min) all_minus_trans_minus_Hexaprenyl_space_diphosphate = 0;
  (all_minus_trans_minus_Hexaprenyl_space_diphosphate*uVol):time = -1*R05616;
  when (time=time.min) xxx_space_3_minus_Hexaprenyl_minus_4_minus_hydroxybenzoate = 0;
  (xxx_space_3_minus_Hexaprenyl_minus_4_minus_hydroxybenzoate*uVol):time = R05616;
  when (time=time.min) xxx_space_3_minus_Hexaprenyl_minus_4_space_5_minus_dihydroxybenzoate = 0;
  (xxx_space_3_minus_Hexaprenyl_minus_4_space_5_minus_dihydroxybenzoate*uVol):time = -1*R04711;
  when (time=time.min) xxx_space_3_minus_Hexaprenyl_minus_4_minus_hydroxy_minus_5_minus_methoxybenzoate = 0;
  (xxx_space_3_minus_Hexaprenyl_minus_4_minus_hydroxy_minus_5_minus_methoxybenzoate*uVol):time = R04711;
  when (time=time.min) xxx_space_2_minus_Hexaprenyl_minus_6_minus_methoxyphenol = 0;
  (xxx_space_2_minus_Hexaprenyl_minus_6_minus_methoxyphenol*uVol):time = -1*R04982;
  when (time=time.min) xxx_space_2_minus_Hexaprenyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone = 0;
  (xxx_space_2_minus_Hexaprenyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone*uVol):time = -1*R04983 + R04982;
  when (time=time.min) xxx_space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone = 0;
  (xxx_space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone*uVol):time = R04983 + -1*R04984;
  when (time=time.min) xxx_space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_5_minus_hydroxy_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone = 0;
  (xxx_space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_5_minus_hydroxy_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone*uVol):time = R04984 + -1*R02175;
  when (time=time.min) xxx_space_4_minus_Hydroxybenzoate = 0;
  (xxx_space_4_minus_Hydroxybenzoate*uVol):time = -1*R05616;
  when (time=time.min) Ubiquinol = 0;
  (Ubiquinol*uVol):time = R02166;
  when (time=time.min) Ubiquinone = 0;
  (Ubiquinone*uVol):time = R02175 + -1*R02166;
  when (time=time.min) xxx_space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate = 0;
  (xxx_space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate*uVol):time = -1*R05617 + -1*R06858;
  when (time=time.min) xxx_space_2_minus_Demethylmenaquinone = 0;
  (xxx_space_2_minus_Demethylmenaquinone*uVol):time = R05617;
  when (time=time.min) xxx_space_2_minus_Phytyl_minus_1_space_4_minus_naphthoquinone = 0;
  (xxx_space_2_minus_Phytyl_minus_1_space_4_minus_naphthoquinone*uVol):time = R06858;
  R04983 = R04983.kf*_space_2_minus_Hexaprenyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone - R04983.kb*_space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone;
  R05617 = R05617.kf*_space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate - R05617.kb*_space_2_minus_Demethylmenaquinone;
  R04984 = R04984.kf*_space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone - R04984.kb*_space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_5_minus_hydroxy_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone;
  R04711 = R04711.kf*_space_3_minus_Hexaprenyl_minus_4_space_5_minus_dihydroxybenzoate - R04711.kb*_space_3_minus_Hexaprenyl_minus_4_minus_hydroxy_minus_5_minus_methoxybenzoate;
  R04982 = R04982.kf*_space_2_minus_Hexaprenyl_minus_6_minus_methoxyphenol - R04982.kb*_space_2_minus_Hexaprenyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone;
  R05616 = R05616.kf*all_minus_trans_minus_Hexaprenyl_space_diphosphate*_space_4_minus_Hydroxybenzoate - R05616.kb*_space_3_minus_Hexaprenyl_minus_4_minus_hydroxybenzoate;
  R02175 = R02175.kf*_space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_5_minus_hydroxy_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone - R02175.kb*Ubiquinone;
  R06858 = R06858.kf*_space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate - R06858.kb*_space_2_minus_Phytyl_minus_1_space_4_minus_naphthoquinone;
  R02166 = R02166.kf*Ubiquinone - R02166.kb*Ubiquinol;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E1_space_14_space_13_space__minus_.sbmlRole="species";
  E1_space_14_space_13_space__minus_.sbmlCompartment="uVol";
  E2_space_1_space_1_space__minus_.sbmlRole="species";
  E2_space_1_space_1_space__minus_.sbmlCompartment="uVol";
  E2_space_1_space_1_space_114.sbmlRole="species";
  E2_space_1_space_1_space_114.sbmlCompartment="uVol";
  E2_space_5_space_1_space__minus_.sbmlRole="species";
  E2_space_5_space_1_space__minus_.sbmlCompartment="uVol";
  E1_space_6_space_5_space_3.sbmlRole="species";
  E1_space_6_space_5_space_3.sbmlCompartment="uVol";
  all_minus_trans_minus_Hexaprenyl_space_diphosphate.sbmlRole="species";
  all_minus_trans_minus_Hexaprenyl_space_diphosphate.sbmlCompartment="uVol";
  xxx_space_3_minus_Hexaprenyl_minus_4_minus_hydroxybenzoate.sbmlRole="species";
  xxx_space_3_minus_Hexaprenyl_minus_4_minus_hydroxybenzoate.sbmlName="_space_3_minus_Hexaprenyl_minus_4_minus_hydroxybenzoate";
  xxx_space_3_minus_Hexaprenyl_minus_4_minus_hydroxybenzoate.sbmlCompartment="uVol";
  xxx_space_3_minus_Hexaprenyl_minus_4_space_5_minus_dihydroxybenzoate.sbmlRole="species";
  xxx_space_3_minus_Hexaprenyl_minus_4_space_5_minus_dihydroxybenzoate.sbmlName="_space_3_minus_Hexaprenyl_minus_4_space_5_minus_dihydroxybenzoate";
  xxx_space_3_minus_Hexaprenyl_minus_4_space_5_minus_dihydroxybenzoate.sbmlCompartment="uVol";
  xxx_space_3_minus_Hexaprenyl_minus_4_minus_hydroxy_minus_5_minus_methoxybenzoate.sbmlRole="species";
  xxx_space_3_minus_Hexaprenyl_minus_4_minus_hydroxy_minus_5_minus_methoxybenzoate.sbmlName="_space_3_minus_Hexaprenyl_minus_4_minus_hydroxy_minus_5_minus_methoxybenzoate";
  xxx_space_3_minus_Hexaprenyl_minus_4_minus_hydroxy_minus_5_minus_methoxybenzoate.sbmlCompartment="uVol";
  xxx_space_2_minus_Hexaprenyl_minus_6_minus_methoxyphenol.sbmlRole="species";
  xxx_space_2_minus_Hexaprenyl_minus_6_minus_methoxyphenol.sbmlName="_space_2_minus_Hexaprenyl_minus_6_minus_methoxyphenol";
  xxx_space_2_minus_Hexaprenyl_minus_6_minus_methoxyphenol.sbmlCompartment="uVol";
  xxx_space_2_minus_Hexaprenyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone.sbmlRole="species";
  xxx_space_2_minus_Hexaprenyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone.sbmlName="_space_2_minus_Hexaprenyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone";
  xxx_space_2_minus_Hexaprenyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone.sbmlCompartment="uVol";
  xxx_space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone.sbmlRole="species";
  xxx_space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone.sbmlName="_space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone";
  xxx_space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone.sbmlCompartment="uVol";
  xxx_space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_5_minus_hydroxy_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone.sbmlRole="species";
  xxx_space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_5_minus_hydroxy_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone.sbmlName="_space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_5_minus_hydroxy_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone";
  xxx_space_2_minus_Hexaprenyl_minus_3_minus_methyl_minus_5_minus_hydroxy_minus_6_minus_methoxy_minus_1_space_4_minus_benzoquinone.sbmlCompartment="uVol";
  xxx_space_4_minus_Hydroxybenzoate.sbmlRole="species";
  xxx_space_4_minus_Hydroxybenzoate.sbmlName="_space_4_minus_Hydroxybenzoate";
  xxx_space_4_minus_Hydroxybenzoate.sbmlCompartment="uVol";
  Ubiquinol.sbmlRole="species";
  Ubiquinol.sbmlCompartment="uVol";
  Ubiquinone.sbmlRole="species";
  Ubiquinone.sbmlCompartment="uVol";
  xxx_space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate.sbmlRole="species";
  xxx_space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate.sbmlName="_space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate";
  xxx_space_1_space_4_minus_Dihydroxy_minus_2_minus_naphthoate.sbmlCompartment="uVol";
  xxx_space_2_minus_Demethylmenaquinone.sbmlRole="species";
  xxx_space_2_minus_Demethylmenaquinone.sbmlName="_space_2_minus_Demethylmenaquinone";
  xxx_space_2_minus_Demethylmenaquinone.sbmlCompartment="uVol";
  xxx_space_2_minus_Phytyl_minus_1_space_4_minus_naphthoquinone.sbmlRole="species";
  xxx_space_2_minus_Phytyl_minus_1_space_4_minus_naphthoquinone.sbmlName="_space_2_minus_Phytyl_minus_1_space_4_minus_naphthoquinone";
  xxx_space_2_minus_Phytyl_minus_1_space_4_minus_naphthoquinone.sbmlCompartment="uVol";
  R04983.sbmlRole="rate";
  R04983.kf.sbmlRole="rate";
  R04983.kb.sbmlRole="rate";
  R05617.sbmlRole="rate";
  R05617.kf.sbmlRole="rate";
  R05617.kb.sbmlRole="rate";
  R04984.sbmlRole="rate";
  R04984.kf.sbmlRole="rate";
  R04984.kb.sbmlRole="rate";
  R04711.sbmlRole="rate";
  R04711.kf.sbmlRole="rate";
  R04711.kb.sbmlRole="rate";
  R04982.sbmlRole="rate";
  R04982.kf.sbmlRole="rate";
  R04982.kb.sbmlRole="rate";
  R05616.sbmlRole="rate";
  R05616.kf.sbmlRole="rate";
  R05616.kb.sbmlRole="rate";
  R02175.sbmlRole="rate";
  R02175.kf.sbmlRole="rate";
  R02175.kb.sbmlRole="rate";
  R06858.sbmlRole="rate";
  R06858.kf.sbmlRole="rate";
  R06858.kb.sbmlRole="rate";
  R02166.sbmlRole="rate";
  R02166.kf.sbmlRole="rate";
  R02166.kb.sbmlRole="rate";
}