// This model generated automatically from SBML
// WARNING: Renamed variable _space_4_minus_Methyl_minus_2_minus_oxopentanoate to xxx_space_4_minus_Methyl_minus_2_minus_oxopentanoate due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid to xxx_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid due to JSim namespace restrictions
// WARNING: Renamed variable _space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid to xxx_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid due to JSim namespace restrictions
// WARNING: Renamed variable _space_S_space__minus_2_minus_Methyl_minus_3_minus_oxopropanoyl_minus_CoA to xxx_space_S_space__minus_2_minus_Methyl_minus_3_minus_oxopropanoyl_minus_CoA due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R01214: L_minus_Valine <=> _space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid 
// R01090: L_minus_Leucine <=> _space_4_minus_Methyl_minus_2_minus_oxopentanoate 
// R00410: Acetoacetate => Acetoacetyl_minus_CoA 
// R07618: Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine <=> Enzyme_space_N6_minus__space_lipoyl_space_lysine 
// R01859: Propanoyl_minus_CoA <=> _space_S_space__minus_2_minus_Methyl_minus_3_minus_oxopropanoyl_minus_CoA 
// R02199: L_minus_Isoleucine <=> _space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_6_space_1_space_42 = 0 M;
  real E2_space_8_space_3_space_5 = 0 M;
  real E1_space_8_space_1_space_4 = 0 M;
  real E6_space_4_space_1_space_3 = 0 M;
  real L_minus_Leucine(time) M;
  real xxx_space_4_minus_Methyl_minus_2_minus_oxopentanoate(time) M;
  real Acetoacetate(time) M;
  real Acetoacetyl_minus_CoA(time) M;
  real Enzyme_space_N6_minus__space_lipoyl_space_lysine(time) M;
  real Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine(time) M;
  real L_minus_Valine(time) M;
  real xxx_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid(time) M;
  real L_minus_Isoleucine(time) M;
  real xxx_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid(time) M;
  real Propanoyl_minus_CoA(time) M;
  real xxx_space_S_space__minus_2_minus_Methyl_minus_3_minus_oxopropanoyl_minus_CoA(time) M;
  real R01214(time) katal;
  extern real R01214.kf;
  extern real R01214.kb;
  real R01090(time) katal;
  extern real R01090.kf;
  extern real R01090.kb;
  real R00410(time) katal;
  extern real R00410.kf;
  extern real R00410.kb;
  real R07618(time) katal;
  extern real R07618.kf;
  extern real R07618.kb;
  real R01859(time) katal;
  extern real R01859.kf;
  extern real R01859.kb;
  real R02199(time) katal;
  extern real R02199.kf;
  extern real R02199.kb;

  // equations
  when (time=time.min) L_minus_Leucine = 0;
  (L_minus_Leucine*uVol):time = -1*R01090;
  when (time=time.min) xxx_space_4_minus_Methyl_minus_2_minus_oxopentanoate = 0;
  (xxx_space_4_minus_Methyl_minus_2_minus_oxopentanoate*uVol):time = R01090;
  when (time=time.min) Acetoacetate = 0;
  (Acetoacetate*uVol):time = -1*R00410;
  when (time=time.min) Acetoacetyl_minus_CoA = 0;
  (Acetoacetyl_minus_CoA*uVol):time = R00410;
  when (time=time.min) Enzyme_space_N6_minus__space_lipoyl_space_lysine = 0;
  (Enzyme_space_N6_minus__space_lipoyl_space_lysine*uVol):time = R07618;
  when (time=time.min) Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine = 0;
  (Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine*uVol):time = -1*R07618;
  when (time=time.min) L_minus_Valine = 0;
  (L_minus_Valine*uVol):time = -1*R01214;
  when (time=time.min) xxx_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid = 0;
  (xxx_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid*uVol):time = R01214;
  when (time=time.min) L_minus_Isoleucine = 0;
  (L_minus_Isoleucine*uVol):time = -1*R02199;
  when (time=time.min) xxx_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid = 0;
  (xxx_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid*uVol):time = R02199;
  when (time=time.min) Propanoyl_minus_CoA = 0;
  (Propanoyl_minus_CoA*uVol):time = -1*R01859;
  when (time=time.min) xxx_space_S_space__minus_2_minus_Methyl_minus_3_minus_oxopropanoyl_minus_CoA = 0;
  (xxx_space_S_space__minus_2_minus_Methyl_minus_3_minus_oxopropanoyl_minus_CoA*uVol):time = R01859;
  R01214 = R01214.kf*L_minus_Valine - R01214.kb*_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid;
  R01090 = R01090.kf*L_minus_Leucine - R01090.kb*_space_4_minus_Methyl_minus_2_minus_oxopentanoate;
  R00410 = R00410.kf*Acetoacetate - R00410.kb*Acetoacetyl_minus_CoA;
  R07618 = R07618.kf*Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine - R07618.kb*Enzyme_space_N6_minus__space_lipoyl_space_lysine;
  R01859 = R01859.kf*Propanoyl_minus_CoA - R01859.kb*_space_S_space__minus_2_minus_Methyl_minus_3_minus_oxopropanoyl_minus_CoA;
  R02199 = R02199.kf*L_minus_Isoleucine - R02199.kb*_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_6_space_1_space_42.sbmlRole="species";
  E2_space_6_space_1_space_42.sbmlCompartment="uVol";
  E2_space_8_space_3_space_5.sbmlRole="species";
  E2_space_8_space_3_space_5.sbmlCompartment="uVol";
  E1_space_8_space_1_space_4.sbmlRole="species";
  E1_space_8_space_1_space_4.sbmlCompartment="uVol";
  E6_space_4_space_1_space_3.sbmlRole="species";
  E6_space_4_space_1_space_3.sbmlCompartment="uVol";
  L_minus_Leucine.sbmlRole="species";
  L_minus_Leucine.sbmlCompartment="uVol";
  xxx_space_4_minus_Methyl_minus_2_minus_oxopentanoate.sbmlRole="species";
  xxx_space_4_minus_Methyl_minus_2_minus_oxopentanoate.sbmlName="_space_4_minus_Methyl_minus_2_minus_oxopentanoate";
  xxx_space_4_minus_Methyl_minus_2_minus_oxopentanoate.sbmlCompartment="uVol";
  Acetoacetate.sbmlRole="species";
  Acetoacetate.sbmlCompartment="uVol";
  Acetoacetyl_minus_CoA.sbmlRole="species";
  Acetoacetyl_minus_CoA.sbmlCompartment="uVol";
  Enzyme_space_N6_minus__space_lipoyl_space_lysine.sbmlRole="species";
  Enzyme_space_N6_minus__space_lipoyl_space_lysine.sbmlCompartment="uVol";
  Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine.sbmlRole="species";
  Enzyme_space_N6_minus__space_dihydrolipoyl_space_lysine.sbmlCompartment="uVol";
  L_minus_Valine.sbmlRole="species";
  L_minus_Valine.sbmlCompartment="uVol";
  xxx_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid.sbmlRole="species";
  xxx_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid.sbmlName="_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid";
  xxx_space_3_minus_Methyl_minus_2_minus_oxobutanoic_space_acid.sbmlCompartment="uVol";
  L_minus_Isoleucine.sbmlRole="species";
  L_minus_Isoleucine.sbmlCompartment="uVol";
  xxx_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid.sbmlRole="species";
  xxx_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid.sbmlName="_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid";
  xxx_space_S_space__minus_3_minus_Methyl_minus_2_minus_oxopentanoic_space_acid.sbmlCompartment="uVol";
  Propanoyl_minus_CoA.sbmlRole="species";
  Propanoyl_minus_CoA.sbmlCompartment="uVol";
  xxx_space_S_space__minus_2_minus_Methyl_minus_3_minus_oxopropanoyl_minus_CoA.sbmlRole="species";
  xxx_space_S_space__minus_2_minus_Methyl_minus_3_minus_oxopropanoyl_minus_CoA.sbmlName="_space_S_space__minus_2_minus_Methyl_minus_3_minus_oxopropanoyl_minus_CoA";
  xxx_space_S_space__minus_2_minus_Methyl_minus_3_minus_oxopropanoyl_minus_CoA.sbmlCompartment="uVol";
  R01214.sbmlRole="rate";
  R01214.kf.sbmlRole="rate";
  R01214.kb.sbmlRole="rate";
  R01090.sbmlRole="rate";
  R01090.kf.sbmlRole="rate";
  R01090.kb.sbmlRole="rate";
  R00410.sbmlRole="rate";
  R00410.kf.sbmlRole="rate";
  R00410.kb.sbmlRole="rate";
  R07618.sbmlRole="rate";
  R07618.kf.sbmlRole="rate";
  R07618.kb.sbmlRole="rate";
  R01859.sbmlRole="rate";
  R01859.kf.sbmlRole="rate";
  R01859.kb.sbmlRole="rate";
  R02199.sbmlRole="rate";
  R02199.kf.sbmlRole="rate";
  R02199.kb.sbmlRole="rate";
}