// This model generated automatically from SBML
// WARNING: Renamed variable _space_4_minus_Phospho_minus_L_minus_aspartate to xxx_space_4_minus_Phospho_minus_L_minus_aspartate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_space_3_space_4_space_5_minus_Tetrahydrodipicolinate to xxx_space_2_space_3_space_4_space_5_minus_Tetrahydrodipicolinate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R02735: LL_minus_2_space_6_minus_Diaminoheptanedioate => meso_minus_2_space_6_minus_Diaminoheptanedioate 
// R02788: meso_minus_2_space_6_minus_Diaminoheptanedioate <=> UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus__gamma__minus_glutamyl_minus_meso_minus_2_space_6_minus_ 
// R04198: _space_2_space_3_space_4_space_5_minus_Tetrahydrodipicolinate => L_minus_2_space_3_minus_Dihydrodipicolinate 
// R02292: L_minus_Aspartate_space_4_minus_semialdehyde <=> L_minus_2_space_3_minus_Dihydrodipicolinate 
// R00480: L_minus_Aspartate <=> _space_4_minus_Phospho_minus_L_minus_aspartate 
// R04365: _space_2_space_3_space_4_space_5_minus_Tetrahydrodipicolinate <=> N_minus_Succinyl_minus_2_minus_L_minus_amino_minus_6_minus_oxoheptanedioate 
// R03658: L_minus_Lysine <=> L_minus_Lysyl_minus_tRNA 
// R02734: N_minus_Succinyl_minus_LL_minus_2_space_6_minus_diaminoheptanedioate <=> LL_minus_2_space_6_minus_Diaminoheptanedioate 
// R04617: UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus__gamma__minus_glutamyl_minus_meso_minus_2_space_6_minus_ <=> UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_glutamyl_minus_6_minus_carboxy_minus_L_minus_lysyl_minus_D_minus_alanyl_minus_ 
// R02291: L_minus_Aspartate_space_4_minus_semialdehyde <=> _space_4_minus_Phospho_minus_L_minus_aspartate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_7_space_2_space_4 = 0 M;
  real E1_space_2_space_1_space_11 = 0 M;
  real E4_space_2_space_1_space_52 = 0 M;
  real E6_space_3_space_2_space_10 = 0 M;
  real E1_space_3_space_1_space_26 = 0 M;
  real E2_space_3_space_1_space_117 = 0 M;
  real E6_space_3_space_2_space_13 = 0 M;
  real E3_space_5_space_1_space_18 = 0 M;
  real E5_space_1_space_1_space_7 = 0 M;
  real E6_space_1_space_1_space_6 = 0 M;
  real xxx_space_4_minus_Phospho_minus_L_minus_aspartate(time) M;
  real L_minus_Aspartate_space_4_minus_semialdehyde(time) M;
  real UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_glutamyl_minus_6_minus_carboxy_minus_L_minus_lysyl_minus_D_minus_alanyl_minus_(time) M;
  real L_minus_2_space_3_minus_Dihydrodipicolinate(time) M;
  real xxx_space_2_space_3_space_4_space_5_minus_Tetrahydrodipicolinate(time) M;
  real UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus__gamma__minus_glutamyl_minus_meso_minus_2_space_6_minus_(time) M;
  real N_minus_Succinyl_minus_2_minus_L_minus_amino_minus_6_minus_oxoheptanedioate(time) M;
  real N_minus_Succinyl_minus_LL_minus_2_space_6_minus_diaminoheptanedioate(time) M;
  real LL_minus_2_space_6_minus_Diaminoheptanedioate(time) M;
  real meso_minus_2_space_6_minus_Diaminoheptanedioate(time) M;
  real L_minus_Lysine(time) M;
  real L_minus_Lysyl_minus_tRNA(time) M;
  real L_minus_Aspartate(time) M;
  real R02735(time) katal;
  extern real R02735.kf;
  extern real R02735.kb;
  real R02788(time) katal;
  extern real R02788.kf;
  extern real R02788.kb;
  real R04198(time) katal;
  extern real R04198.kf;
  extern real R04198.kb;
  real R02292(time) katal;
  extern real R02292.kf;
  extern real R02292.kb;
  real R00480(time) katal;
  extern real R00480.kf;
  extern real R00480.kb;
  real R04365(time) katal;
  extern real R04365.kf;
  extern real R04365.kb;
  real R03658(time) katal;
  extern real R03658.kf;
  extern real R03658.kb;
  real R02734(time) katal;
  extern real R02734.kf;
  extern real R02734.kb;
  real R04617(time) katal;
  extern real R04617.kf;
  extern real R04617.kb;
  real R02291(time) katal;
  extern real R02291.kf;
  extern real R02291.kb;

  // equations
  when (time=time.min) xxx_space_4_minus_Phospho_minus_L_minus_aspartate = 0;
  (xxx_space_4_minus_Phospho_minus_L_minus_aspartate*uVol):time = R00480 + R02291;
  when (time=time.min) L_minus_Aspartate_space_4_minus_semialdehyde = 0;
  (L_minus_Aspartate_space_4_minus_semialdehyde*uVol):time = -1*R02292 + -1*R02291;
  when (time=time.min) UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_glutamyl_minus_6_minus_carboxy_minus_L_minus_lysyl_minus_D_minus_alanyl_minus_ = 0;
  (UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_glutamyl_minus_6_minus_carboxy_minus_L_minus_lysyl_minus_D_minus_alanyl_minus_*uVol):time = R04617;
  when (time=time.min) L_minus_2_space_3_minus_Dihydrodipicolinate = 0;
  (L_minus_2_space_3_minus_Dihydrodipicolinate*uVol):time = R04198 + R02292;
  when (time=time.min) xxx_space_2_space_3_space_4_space_5_minus_Tetrahydrodipicolinate = 0;
  (xxx_space_2_space_3_space_4_space_5_minus_Tetrahydrodipicolinate*uVol):time = -1*R04198 + -1*R04365;
  when (time=time.min) UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus__gamma__minus_glutamyl_minus_meso_minus_2_space_6_minus_ = 0;
  (UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus__gamma__minus_glutamyl_minus_meso_minus_2_space_6_minus_*uVol):time = R02788 + -1*R04617;
  when (time=time.min) N_minus_Succinyl_minus_2_minus_L_minus_amino_minus_6_minus_oxoheptanedioate = 0;
  (N_minus_Succinyl_minus_2_minus_L_minus_amino_minus_6_minus_oxoheptanedioate*uVol):time = R04365;
  when (time=time.min) N_minus_Succinyl_minus_LL_minus_2_space_6_minus_diaminoheptanedioate = 0;
  (N_minus_Succinyl_minus_LL_minus_2_space_6_minus_diaminoheptanedioate*uVol):time = -1*R02734;
  when (time=time.min) LL_minus_2_space_6_minus_Diaminoheptanedioate = 0;
  (LL_minus_2_space_6_minus_Diaminoheptanedioate*uVol):time = -1*R02735 + R02734;
  when (time=time.min) meso_minus_2_space_6_minus_Diaminoheptanedioate = 0;
  (meso_minus_2_space_6_minus_Diaminoheptanedioate*uVol):time = R02735 + -1*R02788;
  when (time=time.min) L_minus_Lysine = 0;
  (L_minus_Lysine*uVol):time = -1*R03658;
  when (time=time.min) L_minus_Lysyl_minus_tRNA = 0;
  (L_minus_Lysyl_minus_tRNA*uVol):time = R03658;
  when (time=time.min) L_minus_Aspartate = 0;
  (L_minus_Aspartate*uVol):time = -1*R00480;
  R02735 = R02735.kf*LL_minus_2_space_6_minus_Diaminoheptanedioate - R02735.kb*meso_minus_2_space_6_minus_Diaminoheptanedioate;
  R02788 = R02788.kf*meso_minus_2_space_6_minus_Diaminoheptanedioate - R02788.kb*UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus__gamma__minus_glutamyl_minus_meso_minus_2_space_6_minus_;
  R04198 = R04198.kf*_space_2_space_3_space_4_space_5_minus_Tetrahydrodipicolinate - R04198.kb*L_minus_2_space_3_minus_Dihydrodipicolinate;
  R02292 = R02292.kf*L_minus_Aspartate_space_4_minus_semialdehyde - R02292.kb*L_minus_2_space_3_minus_Dihydrodipicolinate;
  R00480 = R00480.kf*L_minus_Aspartate - R00480.kb*_space_4_minus_Phospho_minus_L_minus_aspartate;
  R04365 = R04365.kf*_space_2_space_3_space_4_space_5_minus_Tetrahydrodipicolinate - R04365.kb*N_minus_Succinyl_minus_2_minus_L_minus_amino_minus_6_minus_oxoheptanedioate;
  R03658 = R03658.kf*L_minus_Lysine - R03658.kb*L_minus_Lysyl_minus_tRNA;
  R02734 = R02734.kf*N_minus_Succinyl_minus_LL_minus_2_space_6_minus_diaminoheptanedioate - R02734.kb*LL_minus_2_space_6_minus_Diaminoheptanedioate;
  R04617 = R04617.kf*UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus__gamma__minus_glutamyl_minus_meso_minus_2_space_6_minus_ - R04617.kb*UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_glutamyl_minus_6_minus_carboxy_minus_L_minus_lysyl_minus_D_minus_alanyl_minus_;
  R02291 = R02291.kf*L_minus_Aspartate_space_4_minus_semialdehyde - R02291.kb*_space_4_minus_Phospho_minus_L_minus_aspartate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_7_space_2_space_4.sbmlRole="species";
  E2_space_7_space_2_space_4.sbmlCompartment="uVol";
  E1_space_2_space_1_space_11.sbmlRole="species";
  E1_space_2_space_1_space_11.sbmlCompartment="uVol";
  E4_space_2_space_1_space_52.sbmlRole="species";
  E4_space_2_space_1_space_52.sbmlCompartment="uVol";
  E6_space_3_space_2_space_10.sbmlRole="species";
  E6_space_3_space_2_space_10.sbmlCompartment="uVol";
  E1_space_3_space_1_space_26.sbmlRole="species";
  E1_space_3_space_1_space_26.sbmlCompartment="uVol";
  E2_space_3_space_1_space_117.sbmlRole="species";
  E2_space_3_space_1_space_117.sbmlCompartment="uVol";
  E6_space_3_space_2_space_13.sbmlRole="species";
  E6_space_3_space_2_space_13.sbmlCompartment="uVol";
  E3_space_5_space_1_space_18.sbmlRole="species";
  E3_space_5_space_1_space_18.sbmlCompartment="uVol";
  E5_space_1_space_1_space_7.sbmlRole="species";
  E5_space_1_space_1_space_7.sbmlCompartment="uVol";
  E6_space_1_space_1_space_6.sbmlRole="species";
  E6_space_1_space_1_space_6.sbmlCompartment="uVol";
  xxx_space_4_minus_Phospho_minus_L_minus_aspartate.sbmlRole="species";
  xxx_space_4_minus_Phospho_minus_L_minus_aspartate.sbmlName="_space_4_minus_Phospho_minus_L_minus_aspartate";
  xxx_space_4_minus_Phospho_minus_L_minus_aspartate.sbmlCompartment="uVol";
  L_minus_Aspartate_space_4_minus_semialdehyde.sbmlRole="species";
  L_minus_Aspartate_space_4_minus_semialdehyde.sbmlCompartment="uVol";
  UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_glutamyl_minus_6_minus_carboxy_minus_L_minus_lysyl_minus_D_minus_alanyl_minus_.sbmlRole="species";
  UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus_glutamyl_minus_6_minus_carboxy_minus_L_minus_lysyl_minus_D_minus_alanyl_minus_.sbmlCompartment="uVol";
  L_minus_2_space_3_minus_Dihydrodipicolinate.sbmlRole="species";
  L_minus_2_space_3_minus_Dihydrodipicolinate.sbmlCompartment="uVol";
  xxx_space_2_space_3_space_4_space_5_minus_Tetrahydrodipicolinate.sbmlRole="species";
  xxx_space_2_space_3_space_4_space_5_minus_Tetrahydrodipicolinate.sbmlName="_space_2_space_3_space_4_space_5_minus_Tetrahydrodipicolinate";
  xxx_space_2_space_3_space_4_space_5_minus_Tetrahydrodipicolinate.sbmlCompartment="uVol";
  UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus__gamma__minus_glutamyl_minus_meso_minus_2_space_6_minus_.sbmlRole="species";
  UDP_minus_N_minus_acetylmuramoyl_minus_L_minus_alanyl_minus_D_minus__gamma__minus_glutamyl_minus_meso_minus_2_space_6_minus_.sbmlCompartment="uVol";
  N_minus_Succinyl_minus_2_minus_L_minus_amino_minus_6_minus_oxoheptanedioate.sbmlRole="species";
  N_minus_Succinyl_minus_2_minus_L_minus_amino_minus_6_minus_oxoheptanedioate.sbmlCompartment="uVol";
  N_minus_Succinyl_minus_LL_minus_2_space_6_minus_diaminoheptanedioate.sbmlRole="species";
  N_minus_Succinyl_minus_LL_minus_2_space_6_minus_diaminoheptanedioate.sbmlCompartment="uVol";
  LL_minus_2_space_6_minus_Diaminoheptanedioate.sbmlRole="species";
  LL_minus_2_space_6_minus_Diaminoheptanedioate.sbmlCompartment="uVol";
  meso_minus_2_space_6_minus_Diaminoheptanedioate.sbmlRole="species";
  meso_minus_2_space_6_minus_Diaminoheptanedioate.sbmlCompartment="uVol";
  L_minus_Lysine.sbmlRole="species";
  L_minus_Lysine.sbmlCompartment="uVol";
  L_minus_Lysyl_minus_tRNA.sbmlRole="species";
  L_minus_Lysyl_minus_tRNA.sbmlCompartment="uVol";
  L_minus_Aspartate.sbmlRole="species";
  L_minus_Aspartate.sbmlCompartment="uVol";
  R02735.sbmlRole="rate";
  R02735.kf.sbmlRole="rate";
  R02735.kb.sbmlRole="rate";
  R02788.sbmlRole="rate";
  R02788.kf.sbmlRole="rate";
  R02788.kb.sbmlRole="rate";
  R04198.sbmlRole="rate";
  R04198.kf.sbmlRole="rate";
  R04198.kb.sbmlRole="rate";
  R02292.sbmlRole="rate";
  R02292.kf.sbmlRole="rate";
  R02292.kb.sbmlRole="rate";
  R00480.sbmlRole="rate";
  R00480.kf.sbmlRole="rate";
  R00480.kb.sbmlRole="rate";
  R04365.sbmlRole="rate";
  R04365.kf.sbmlRole="rate";
  R04365.kb.sbmlRole="rate";
  R03658.sbmlRole="rate";
  R03658.kf.sbmlRole="rate";
  R03658.kb.sbmlRole="rate";
  R02734.sbmlRole="rate";
  R02734.kf.sbmlRole="rate";
  R02734.kb.sbmlRole="rate";
  R04617.sbmlRole="rate";
  R04617.kf.sbmlRole="rate";
  R04617.kb.sbmlRole="rate";
  R02291.sbmlRole="rate";
  R02291.kf.sbmlRole="rate";
  R02291.kb.sbmlRole="rate";
}