// This model generated automatically from SBML
// WARNING: Renamed variable _space_2_space_3_space_2_space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_D_minus_ to xxx_space_2_space_3_space_2_space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_D_minus_ due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate to xxx_space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_space_3_space_2_space__space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_ to xxx_space_2_space_3_space_2_space__space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_ due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate_space_8_minus_phosphate to xxx_space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate_space_8_minus_phosphate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_space_3_minus_Bis_space_3_minus_hydroxytetradecanoyl_space__minus__beta__minus_D_minus_glucosaminyl_space_1_minus_phosphate to xxx_space_2_space_3_minus_Bis_space_3_minus_hydroxytetradecanoyl_space__minus__beta__minus_D_minus_glucosaminyl_space_1_minus_phosphate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R03254: D_minus_Arabinose_space_5_minus_phosphate <=> _space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate_space_8_minus_phosphate 
// R04606: UDP_minus_2_space_3_minus_bis_space_3_minus_hydroxytetradecanoyl_space_glucosamine _space_2_space_3_minus_Bis_space_3_minus_hydroxytetradecanoyl_space__minus__beta__minus_D_minus_glucosaminyl_space_1_minus_phosphate <=> _space_2_space_3_space_2_space__space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_ 
// R04657: _space_2_space_3_space_2_space__space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_ <=> _space_2_space_3_space_2_space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_D_minus_ 
// R04567: UDP_minus_N_minus_acetyl_minus_D_minus_glucosamine <=> UDP_minus_3_minus_O_minus__space_3_minus_hydroxytetradecanoyl_space__minus_N_minus_acetylglucosamine 
// R03351: _space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate <=> CMP_minus_3_minus_deoxy_minus_D_minus_manno_minus_octulosonate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_3_space_1_space_129 = 0 M;
  real E2_space_7_space_7_space_38 = 0 M;
  real E2_space_7_space_1_space_130 = 0 M;
  real E2_space_4_space_1_space_182 = 0 M;
  real E2_space_5_space_1_space_55 = 0 M;
  real UDP_minus_N_minus_acetyl_minus_D_minus_glucosamine(time) M;
  real UDP_minus_3_minus_O_minus__space_3_minus_hydroxytetradecanoyl_space__minus_N_minus_acetylglucosamine(time) M;
  real CMP_minus_3_minus_deoxy_minus_D_minus_manno_minus_octulosonate(time) M;
  real xxx_space_2_space_3_space_2_space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_D_minus_(time) M;
  real xxx_space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate(time) M;
  real UDP_minus_2_space_3_minus_bis_space_3_minus_hydroxytetradecanoyl_space_glucosamine(time) M;
  real xxx_space_2_space_3_space_2_space__space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_(time) M;
  real xxx_space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate_space_8_minus_phosphate(time) M;
  real xxx_space_2_space_3_minus_Bis_space_3_minus_hydroxytetradecanoyl_space__minus__beta__minus_D_minus_glucosaminyl_space_1_minus_phosphate(time) M;
  real D_minus_Arabinose_space_5_minus_phosphate(time) M;
  real R03254(time) katal;
  extern real R03254.kf;
  extern real R03254.kb;
  real R04606(time) katal;
  extern real R04606.kf;
  extern real R04606.kb;
  real R04657(time) katal;
  extern real R04657.kf;
  extern real R04657.kb;
  real R04567(time) katal;
  extern real R04567.kf;
  extern real R04567.kb;
  real R03351(time) katal;
  extern real R03351.kf;
  extern real R03351.kb;

  // equations
  when (time=time.min) UDP_minus_N_minus_acetyl_minus_D_minus_glucosamine = 0;
  (UDP_minus_N_minus_acetyl_minus_D_minus_glucosamine*uVol):time = -1*R04567;
  when (time=time.min) UDP_minus_3_minus_O_minus__space_3_minus_hydroxytetradecanoyl_space__minus_N_minus_acetylglucosamine = 0;
  (UDP_minus_3_minus_O_minus__space_3_minus_hydroxytetradecanoyl_space__minus_N_minus_acetylglucosamine*uVol):time = R04567;
  when (time=time.min) CMP_minus_3_minus_deoxy_minus_D_minus_manno_minus_octulosonate = 0;
  (CMP_minus_3_minus_deoxy_minus_D_minus_manno_minus_octulosonate*uVol):time = R03351;
  when (time=time.min) xxx_space_2_space_3_space_2_space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_D_minus_ = 0;
  (xxx_space_2_space_3_space_2_space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_D_minus_*uVol):time = R04657;
  when (time=time.min) xxx_space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate = 0;
  (xxx_space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate*uVol):time = -1*R03351;
  when (time=time.min) UDP_minus_2_space_3_minus_bis_space_3_minus_hydroxytetradecanoyl_space_glucosamine = 0;
  (UDP_minus_2_space_3_minus_bis_space_3_minus_hydroxytetradecanoyl_space_glucosamine*uVol):time = -1*R04606;
  when (time=time.min) xxx_space_2_space_3_space_2_space__space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_ = 0;
  (xxx_space_2_space_3_space_2_space__space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_*uVol):time = R04606 + -1*R04657;
  when (time=time.min) xxx_space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate_space_8_minus_phosphate = 0;
  (xxx_space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate_space_8_minus_phosphate*uVol):time = R03254;
  when (time=time.min) xxx_space_2_space_3_minus_Bis_space_3_minus_hydroxytetradecanoyl_space__minus__beta__minus_D_minus_glucosaminyl_space_1_minus_phosphate = 0;
  (xxx_space_2_space_3_minus_Bis_space_3_minus_hydroxytetradecanoyl_space__minus__beta__minus_D_minus_glucosaminyl_space_1_minus_phosphate*uVol):time = -1*R04606;
  when (time=time.min) D_minus_Arabinose_space_5_minus_phosphate = 0;
  (D_minus_Arabinose_space_5_minus_phosphate*uVol):time = -1*R03254;
  R03254 = R03254.kf*D_minus_Arabinose_space_5_minus_phosphate - R03254.kb*_space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate_space_8_minus_phosphate;
  R04606 = R04606.kf*UDP_minus_2_space_3_minus_bis_space_3_minus_hydroxytetradecanoyl_space_glucosamine*_space_2_space_3_minus_Bis_space_3_minus_hydroxytetradecanoyl_space__minus__beta__minus_D_minus_glucosaminyl_space_1_minus_phosphate - R04606.kb*_space_2_space_3_space_2_space__space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_;
  R04657 = R04657.kf*_space_2_space_3_space_2_space__space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_ - R04657.kb*_space_2_space_3_space_2_space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_D_minus_;
  R04567 = R04567.kf*UDP_minus_N_minus_acetyl_minus_D_minus_glucosamine - R04567.kb*UDP_minus_3_minus_O_minus__space_3_minus_hydroxytetradecanoyl_space__minus_N_minus_acetylglucosamine;
  R03351 = R03351.kf*_space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate - R03351.kb*CMP_minus_3_minus_deoxy_minus_D_minus_manno_minus_octulosonate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_3_space_1_space_129.sbmlRole="species";
  E2_space_3_space_1_space_129.sbmlCompartment="uVol";
  E2_space_7_space_7_space_38.sbmlRole="species";
  E2_space_7_space_7_space_38.sbmlCompartment="uVol";
  E2_space_7_space_1_space_130.sbmlRole="species";
  E2_space_7_space_1_space_130.sbmlCompartment="uVol";
  E2_space_4_space_1_space_182.sbmlRole="species";
  E2_space_4_space_1_space_182.sbmlCompartment="uVol";
  E2_space_5_space_1_space_55.sbmlRole="species";
  E2_space_5_space_1_space_55.sbmlCompartment="uVol";
  UDP_minus_N_minus_acetyl_minus_D_minus_glucosamine.sbmlRole="species";
  UDP_minus_N_minus_acetyl_minus_D_minus_glucosamine.sbmlCompartment="uVol";
  UDP_minus_3_minus_O_minus__space_3_minus_hydroxytetradecanoyl_space__minus_N_minus_acetylglucosamine.sbmlRole="species";
  UDP_minus_3_minus_O_minus__space_3_minus_hydroxytetradecanoyl_space__minus_N_minus_acetylglucosamine.sbmlCompartment="uVol";
  CMP_minus_3_minus_deoxy_minus_D_minus_manno_minus_octulosonate.sbmlRole="species";
  CMP_minus_3_minus_deoxy_minus_D_minus_manno_minus_octulosonate.sbmlCompartment="uVol";
  xxx_space_2_space_3_space_2_space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_D_minus_.sbmlRole="species";
  xxx_space_2_space_3_space_2_space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_D_minus_.sbmlName="_space_2_space_3_space_2_space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_D_minus_";
  xxx_space_2_space_3_space_2_space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_D_minus_.sbmlCompartment="uVol";
  xxx_space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate.sbmlRole="species";
  xxx_space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate.sbmlName="_space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate";
  xxx_space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate.sbmlCompartment="uVol";
  UDP_minus_2_space_3_minus_bis_space_3_minus_hydroxytetradecanoyl_space_glucosamine.sbmlRole="species";
  UDP_minus_2_space_3_minus_bis_space_3_minus_hydroxytetradecanoyl_space_glucosamine.sbmlCompartment="uVol";
  xxx_space_2_space_3_space_2_space__space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_.sbmlRole="species";
  xxx_space_2_space_3_space_2_space__space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_.sbmlName="_space_2_space_3_space_2_space__space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_";
  xxx_space_2_space_3_space_2_space__space_3_space__minus_Tetrakis_space_3_minus_hydroxytetradecanoyl_space__minus_D_minus_glucosaminyl_minus_1_space_6_minus__beta__minus_.sbmlCompartment="uVol";
  xxx_space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate_space_8_minus_phosphate.sbmlRole="species";
  xxx_space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate_space_8_minus_phosphate.sbmlName="_space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate_space_8_minus_phosphate";
  xxx_space_3_minus_Deoxy_minus_D_minus_manno_minus_octulosonate_space_8_minus_phosphate.sbmlCompartment="uVol";
  xxx_space_2_space_3_minus_Bis_space_3_minus_hydroxytetradecanoyl_space__minus__beta__minus_D_minus_glucosaminyl_space_1_minus_phosphate.sbmlRole="species";
  xxx_space_2_space_3_minus_Bis_space_3_minus_hydroxytetradecanoyl_space__minus__beta__minus_D_minus_glucosaminyl_space_1_minus_phosphate.sbmlName="_space_2_space_3_minus_Bis_space_3_minus_hydroxytetradecanoyl_space__minus__beta__minus_D_minus_glucosaminyl_space_1_minus_phosphate";
  xxx_space_2_space_3_minus_Bis_space_3_minus_hydroxytetradecanoyl_space__minus__beta__minus_D_minus_glucosaminyl_space_1_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Arabinose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Arabinose_space_5_minus_phosphate.sbmlCompartment="uVol";
  R03254.sbmlRole="rate";
  R03254.kf.sbmlRole="rate";
  R03254.kb.sbmlRole="rate";
  R04606.sbmlRole="rate";
  R04606.kf.sbmlRole="rate";
  R04606.kb.sbmlRole="rate";
  R04657.sbmlRole="rate";
  R04657.kf.sbmlRole="rate";
  R04657.kb.sbmlRole="rate";
  R04567.sbmlRole="rate";
  R04567.kf.sbmlRole="rate";
  R04567.kb.sbmlRole="rate";
  R03351.sbmlRole="rate";
  R03351.kf.sbmlRole="rate";
  R03351.kb.sbmlRole="rate";
}