// This model generated automatically from SBML
// WARNING: Renamed variable _space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate to xxx_space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate to xxx_space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal to xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal due to JSim namespace restrictions
// WARNING: Renamed variable _beta__minus_D_minus_Glucuronoside to xxx_beta__minus_D_minus_Glucuronoside due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus_Dehydro_minus_L_minus_gulonate to xxx_space_3_minus_Dehydro_minus_L_minus_gulonate due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus_Dehydro_minus_L_minus_gulonate_space_6_minus_phosphate to xxx_space_3_minus_Dehydro_minus_L_minus_gulonate_space_6_minus_phosphate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R05606: D_minus_Mannonate => _space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate 
// R00289: D_minus_Glucose_space_1_minus_phosphate <=> UDP_minus_glucose 
// R05605: _space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate => _space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal 
// R07125: _space_3_minus_Dehydro_minus_L_minus_gulonate_space_6_minus_phosphate <=> L_minus_Xylulose_space_5_minus_phosphate 
// R01983: D_minus_Galacturonate <=> D_minus_Tagaturonate 
// R01901: L_minus_Xylulose => L_minus_Xylulose_space_5_minus_phosphate 
// R01529: D_minus_Ribulose_space_5_minus_phosphate => D_minus_Xylulose_space_5_minus_phosphate 
// R01482: D_minus_Glucuronate => D_minus_Fructuronate 
// R01785: L_minus_Xylulose_space_1_minus_phosphate => Glycerone_space_phosphate Glycolaldehyde 
// R07127: _space_3_minus_Dehydro_minus_L_minus_gulonate <=> _space_3_minus_Dehydro_minus_L_minus_gulonate_space_6_minus_phosphate 
// R05850: L_minus_Ribulose_space_5_minus_phosphate <=> D_minus_Xylulose_space_5_minus_phosphate 
// R01541: _space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate => _space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate 
// R01478: _beta__minus_D_minus_Glucuronoside <=> D_minus_Glucuronate 
// R03244: L_minus_Xylulose_space_5_minus_phosphate => L_minus_Ribulose_space_5_minus_phosphate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_7_space_1_space_45 = 0 M;
  real E4_space_1_space_2_space_14 = 0 M;
  real E4_space_2_space_1_space_8 = 0 M;
  real E2_space_7_space_7_space_9 = 0 M;
  real E5_space_3_space_1_space_12 = 0 M;
  real E3_space_2_space_1_space_31 = 0 M;
  real E4_space_1_space_2_space_19 = 0 M;
  real E5_space_1_space_3_space_1 = 0 M;
  real E5_space_1_space_3_space_4 = 0 M;
  real E2_space_7_space_1_space_53 = 0 M;
  real E5_space__minus__space__minus__space__minus_ = 0 M;
  real E4_space_1_space_1_space_85 = 0 M;
  real xxx_space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate(time) M;
  real xxx_space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate(time) M;
  real xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal(time) M;
  real D_minus_Tagaturonate(time) M;
  real D_minus_Mannonate(time) M;
  real UDP_minus_glucose(time) M;
  real D_minus_Glucose_space_1_minus_phosphate(time) M;
  real D_minus_Galacturonate(time) M;
  real D_minus_Fructuronate(time) M;
  real xxx_beta__minus_D_minus_Glucuronoside(time) M;
  real Glycerone_space_phosphate(time) M;
  real Glycolaldehyde(time) M;
  real D_minus_Xylulose_space_5_minus_phosphate(time) M;
  real D_minus_Ribulose_space_5_minus_phosphate(time) M;
  real D_minus_Glucuronate(time) M;
  real L_minus_Xylulose_space_1_minus_phosphate(time) M;
  real L_minus_Xylulose(time) M;
  real L_minus_Xylulose_space_5_minus_phosphate(time) M;
  real L_minus_Ribulose_space_5_minus_phosphate(time) M;
  real xxx_space_3_minus_Dehydro_minus_L_minus_gulonate(time) M;
  real xxx_space_3_minus_Dehydro_minus_L_minus_gulonate_space_6_minus_phosphate(time) M;
  real R05606(time) katal;
  extern real R05606.kf;
  extern real R05606.kb;
  real R00289(time) katal;
  extern real R00289.kf;
  extern real R00289.kb;
  real R05605(time) katal;
  extern real R05605.kf;
  extern real R05605.kb;
  real R07125(time) katal;
  extern real R07125.kf;
  extern real R07125.kb;
  real R01983(time) katal;
  extern real R01983.kf;
  extern real R01983.kb;
  real R01901(time) katal;
  extern real R01901.kf;
  extern real R01901.kb;
  real R01529(time) katal;
  extern real R01529.kf;
  extern real R01529.kb;
  real R01482(time) katal;
  extern real R01482.kf;
  extern real R01482.kb;
  real R01785(time) katal;
  extern real R01785.kf;
  extern real R01785.kb;
  real R07127(time) katal;
  extern real R07127.kf;
  extern real R07127.kb;
  real R05850(time) katal;
  extern real R05850.kf;
  extern real R05850.kb;
  real R01541(time) katal;
  extern real R01541.kf;
  extern real R01541.kb;
  real R01478(time) katal;
  extern real R01478.kf;
  extern real R01478.kb;
  real R03244(time) katal;
  extern real R03244.kf;
  extern real R03244.kb;

  // equations
  when (time=time.min) xxx_space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate = 0;
  (xxx_space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate*uVol):time = R05606 + -1*R01541;
  when (time=time.min) xxx_space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate = 0;
  (xxx_space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate*uVol):time = -1*R05605 + R01541;
  when (time=time.min) xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal = 0;
  (xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal*uVol):time = R05605;
  when (time=time.min) D_minus_Tagaturonate = 0;
  (D_minus_Tagaturonate*uVol):time = R01983;
  when (time=time.min) D_minus_Mannonate = 0;
  (D_minus_Mannonate*uVol):time = -1*R05606;
  when (time=time.min) UDP_minus_glucose = 0;
  (UDP_minus_glucose*uVol):time = R00289;
  when (time=time.min) D_minus_Glucose_space_1_minus_phosphate = 0;
  (D_minus_Glucose_space_1_minus_phosphate*uVol):time = -1*R00289;
  when (time=time.min) D_minus_Galacturonate = 0;
  (D_minus_Galacturonate*uVol):time = -1*R01983;
  when (time=time.min) D_minus_Fructuronate = 0;
  (D_minus_Fructuronate*uVol):time = R01482;
  when (time=time.min) xxx_beta__minus_D_minus_Glucuronoside = 0;
  (xxx_beta__minus_D_minus_Glucuronoside*uVol):time = -1*R01478;
  when (time=time.min) Glycerone_space_phosphate = 0;
  (Glycerone_space_phosphate*uVol):time = R01785;
  when (time=time.min) Glycolaldehyde = 0;
  (Glycolaldehyde*uVol):time = R01785;
  when (time=time.min) D_minus_Xylulose_space_5_minus_phosphate = 0;
  (D_minus_Xylulose_space_5_minus_phosphate*uVol):time = R01529 + R05850;
  when (time=time.min) D_minus_Ribulose_space_5_minus_phosphate = 0;
  (D_minus_Ribulose_space_5_minus_phosphate*uVol):time = -1*R01529;
  when (time=time.min) D_minus_Glucuronate = 0;
  (D_minus_Glucuronate*uVol):time = -1*R01482 + R01478;
  when (time=time.min) L_minus_Xylulose_space_1_minus_phosphate = 0;
  (L_minus_Xylulose_space_1_minus_phosphate*uVol):time = -1*R01785;
  when (time=time.min) L_minus_Xylulose = 0;
  (L_minus_Xylulose*uVol):time = -1*R01901;
  when (time=time.min) L_minus_Xylulose_space_5_minus_phosphate = 0;
  (L_minus_Xylulose_space_5_minus_phosphate*uVol):time = R07125 + R01901 + -1*R03244;
  when (time=time.min) L_minus_Ribulose_space_5_minus_phosphate = 0;
  (L_minus_Ribulose_space_5_minus_phosphate*uVol):time = -1*R05850 + R03244;
  when (time=time.min) xxx_space_3_minus_Dehydro_minus_L_minus_gulonate = 0;
  (xxx_space_3_minus_Dehydro_minus_L_minus_gulonate*uVol):time = -1*R07127;
  when (time=time.min) xxx_space_3_minus_Dehydro_minus_L_minus_gulonate_space_6_minus_phosphate = 0;
  (xxx_space_3_minus_Dehydro_minus_L_minus_gulonate_space_6_minus_phosphate*uVol):time = -1*R07125 + R07127;
  R05606 = R05606.kf*D_minus_Mannonate - R05606.kb*_space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate;
  R00289 = R00289.kf*D_minus_Glucose_space_1_minus_phosphate - R00289.kb*UDP_minus_glucose;
  R05605 = R05605.kf*_space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate - R05605.kb*_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal;
  R07125 = R07125.kf*_space_3_minus_Dehydro_minus_L_minus_gulonate_space_6_minus_phosphate - R07125.kb*L_minus_Xylulose_space_5_minus_phosphate;
  R01983 = R01983.kf*D_minus_Galacturonate - R01983.kb*D_minus_Tagaturonate;
  R01901 = R01901.kf*L_minus_Xylulose - R01901.kb*L_minus_Xylulose_space_5_minus_phosphate;
  R01529 = R01529.kf*D_minus_Ribulose_space_5_minus_phosphate - R01529.kb*D_minus_Xylulose_space_5_minus_phosphate;
  R01482 = R01482.kf*D_minus_Glucuronate - R01482.kb*D_minus_Fructuronate;
  R01785 = R01785.kf*L_minus_Xylulose_space_1_minus_phosphate - R01785.kb*Glycerone_space_phosphate*Glycolaldehyde;
  R07127 = R07127.kf*_space_3_minus_Dehydro_minus_L_minus_gulonate - R07127.kb*_space_3_minus_Dehydro_minus_L_minus_gulonate_space_6_minus_phosphate;
  R05850 = R05850.kf*L_minus_Ribulose_space_5_minus_phosphate - R05850.kb*D_minus_Xylulose_space_5_minus_phosphate;
  R01541 = R01541.kf*_space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate - R01541.kb*_space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate;
  R01478 = R01478.kf*_beta__minus_D_minus_Glucuronoside - R01478.kb*D_minus_Glucuronate;
  R03244 = R03244.kf*L_minus_Xylulose_space_5_minus_phosphate - R03244.kb*L_minus_Ribulose_space_5_minus_phosphate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_7_space_1_space_45.sbmlRole="species";
  E2_space_7_space_1_space_45.sbmlCompartment="uVol";
  E4_space_1_space_2_space_14.sbmlRole="species";
  E4_space_1_space_2_space_14.sbmlCompartment="uVol";
  E4_space_2_space_1_space_8.sbmlRole="species";
  E4_space_2_space_1_space_8.sbmlCompartment="uVol";
  E2_space_7_space_7_space_9.sbmlRole="species";
  E2_space_7_space_7_space_9.sbmlCompartment="uVol";
  E5_space_3_space_1_space_12.sbmlRole="species";
  E5_space_3_space_1_space_12.sbmlCompartment="uVol";
  E3_space_2_space_1_space_31.sbmlRole="species";
  E3_space_2_space_1_space_31.sbmlCompartment="uVol";
  E4_space_1_space_2_space_19.sbmlRole="species";
  E4_space_1_space_2_space_19.sbmlCompartment="uVol";
  E5_space_1_space_3_space_1.sbmlRole="species";
  E5_space_1_space_3_space_1.sbmlCompartment="uVol";
  E5_space_1_space_3_space_4.sbmlRole="species";
  E5_space_1_space_3_space_4.sbmlCompartment="uVol";
  E2_space_7_space_1_space_53.sbmlRole="species";
  E2_space_7_space_1_space_53.sbmlCompartment="uVol";
  E5_space__minus__space__minus__space__minus_.sbmlRole="species";
  E5_space__minus__space__minus__space__minus_.sbmlCompartment="uVol";
  E4_space_1_space_1_space_85.sbmlRole="species";
  E4_space_1_space_1_space_85.sbmlCompartment="uVol";
  xxx_space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate.sbmlRole="species";
  xxx_space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate.sbmlName="_space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate";
  xxx_space_2_minus_Dehydro_minus_3_minus_deoxy_minus_D_minus_gluconate.sbmlCompartment="uVol";
  xxx_space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate.sbmlRole="species";
  xxx_space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate.sbmlName="_space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate";
  xxx_space_2_minus_Dehydro_minus_3_minus_deoxy_minus_6_minus_phospho_minus_D_minus_gluconate.sbmlCompartment="uVol";
  xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal.sbmlRole="species";
  xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal.sbmlName="_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal";
  xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal.sbmlCompartment="uVol";
  D_minus_Tagaturonate.sbmlRole="species";
  D_minus_Tagaturonate.sbmlCompartment="uVol";
  D_minus_Mannonate.sbmlRole="species";
  D_minus_Mannonate.sbmlCompartment="uVol";
  UDP_minus_glucose.sbmlRole="species";
  UDP_minus_glucose.sbmlCompartment="uVol";
  D_minus_Glucose_space_1_minus_phosphate.sbmlRole="species";
  D_minus_Glucose_space_1_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Galacturonate.sbmlRole="species";
  D_minus_Galacturonate.sbmlCompartment="uVol";
  D_minus_Fructuronate.sbmlRole="species";
  D_minus_Fructuronate.sbmlCompartment="uVol";
  xxx_beta__minus_D_minus_Glucuronoside.sbmlRole="species";
  xxx_beta__minus_D_minus_Glucuronoside.sbmlName="_beta__minus_D_minus_Glucuronoside";
  xxx_beta__minus_D_minus_Glucuronoside.sbmlCompartment="uVol";
  Glycerone_space_phosphate.sbmlRole="species";
  Glycerone_space_phosphate.sbmlCompartment="uVol";
  Glycolaldehyde.sbmlRole="species";
  Glycolaldehyde.sbmlCompartment="uVol";
  D_minus_Xylulose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Xylulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Ribulose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Ribulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Glucuronate.sbmlRole="species";
  D_minus_Glucuronate.sbmlCompartment="uVol";
  L_minus_Xylulose_space_1_minus_phosphate.sbmlRole="species";
  L_minus_Xylulose_space_1_minus_phosphate.sbmlCompartment="uVol";
  L_minus_Xylulose.sbmlRole="species";
  L_minus_Xylulose.sbmlCompartment="uVol";
  L_minus_Xylulose_space_5_minus_phosphate.sbmlRole="species";
  L_minus_Xylulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  L_minus_Ribulose_space_5_minus_phosphate.sbmlRole="species";
  L_minus_Ribulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  xxx_space_3_minus_Dehydro_minus_L_minus_gulonate.sbmlRole="species";
  xxx_space_3_minus_Dehydro_minus_L_minus_gulonate.sbmlName="_space_3_minus_Dehydro_minus_L_minus_gulonate";
  xxx_space_3_minus_Dehydro_minus_L_minus_gulonate.sbmlCompartment="uVol";
  xxx_space_3_minus_Dehydro_minus_L_minus_gulonate_space_6_minus_phosphate.sbmlRole="species";
  xxx_space_3_minus_Dehydro_minus_L_minus_gulonate_space_6_minus_phosphate.sbmlName="_space_3_minus_Dehydro_minus_L_minus_gulonate_space_6_minus_phosphate";
  xxx_space_3_minus_Dehydro_minus_L_minus_gulonate_space_6_minus_phosphate.sbmlCompartment="uVol";
  R05606.sbmlRole="rate";
  R05606.kf.sbmlRole="rate";
  R05606.kb.sbmlRole="rate";
  R00289.sbmlRole="rate";
  R00289.kf.sbmlRole="rate";
  R00289.kb.sbmlRole="rate";
  R05605.sbmlRole="rate";
  R05605.kf.sbmlRole="rate";
  R05605.kb.sbmlRole="rate";
  R07125.sbmlRole="rate";
  R07125.kf.sbmlRole="rate";
  R07125.kb.sbmlRole="rate";
  R01983.sbmlRole="rate";
  R01983.kf.sbmlRole="rate";
  R01983.kb.sbmlRole="rate";
  R01901.sbmlRole="rate";
  R01901.kf.sbmlRole="rate";
  R01901.kb.sbmlRole="rate";
  R01529.sbmlRole="rate";
  R01529.kf.sbmlRole="rate";
  R01529.kb.sbmlRole="rate";
  R01482.sbmlRole="rate";
  R01482.kf.sbmlRole="rate";
  R01482.kb.sbmlRole="rate";
  R01785.sbmlRole="rate";
  R01785.kf.sbmlRole="rate";
  R01785.kb.sbmlRole="rate";
  R07127.sbmlRole="rate";
  R07127.kf.sbmlRole="rate";
  R07127.kb.sbmlRole="rate";
  R05850.sbmlRole="rate";
  R05850.kf.sbmlRole="rate";
  R05850.kb.sbmlRole="rate";
  R01541.sbmlRole="rate";
  R01541.kf.sbmlRole="rate";
  R01541.kb.sbmlRole="rate";
  R01478.sbmlRole="rate";
  R01478.kf.sbmlRole="rate";
  R01478.kb.sbmlRole="rate";
  R03244.sbmlRole="rate";
  R03244.kf.sbmlRole="rate";
  R03244.kb.sbmlRole="rate";
}