// This model generated automatically from SBML
// WARNING: Renamed variable _space_4_minus_Phospho_minus_D_minus_erythronate to xxx_space_4_minus_Phospho_minus_D_minus_erythronate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_Oxo_minus_3_minus_hydroxy_minus_4_minus_phosphobutanoate to xxx_space_2_minus_Oxo_minus_3_minus_hydroxy_minus_4_minus_phosphobutanoate due to JSim namespace restrictions
// WARNING: Renamed variable _space_3_minus_Amino_minus_2_minus_oxopropyl_space_phosphate to xxx_space_3_minus_Amino_minus_2_minus_oxopropyl_space_phosphate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_Amino_minus_3_minus_oxo_minus_4_minus_phosphonooxybutyrate to xxx_space_2_minus_Amino_minus_3_minus_oxo_minus_4_minus_phosphonooxybutyrate due to JSim namespace restrictions
// WARNING: Renamed variable _space_4_minus_Hydroxy_minus_L_minus_threonine to xxx_space_4_minus_Hydroxy_minus_L_minus_threonine due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R05085: O_minus_Phospho_minus_4_minus_hydroxy_minus_L_minus_threonine => _space_2_minus_Oxo_minus_3_minus_hydroxy_minus_4_minus_phosphobutanoate 
// R01710: Pyridoxamine => Pyridoxal 
// R05838: _space_3_minus_Amino_minus_2_minus_oxopropyl_space_phosphate <=> Pyridoxine_space_phosphate 
// R01825: D_minus_Erythrose_space_4_minus_phosphate => _space_4_minus_Phospho_minus_D_minus_erythronate 
// R05681: O_minus_Phospho_minus_4_minus_hydroxy_minus_L_minus_threonine <=> _space_2_minus_Amino_minus_3_minus_oxo_minus_4_minus_phosphonooxybutyrate 
// R00278: Pyridoxine_space_phosphate <=> Pyridoxal_space_phosphate 
// R01711: Pyridoxine => Pyridoxal 
// R00174: Pyridoxal <=> Pyridoxal_space_phosphate 
// R00277: Pyridoxamine_space_phosphate <=> Pyridoxal_space_phosphate 
// R01909: Pyridoxine <=> Pyridoxine_space_phosphate 
// R02493: Pyridoxamine <=> Pyridoxamine_space_phosphate 
// R05086: O_minus_Phospho_minus_4_minus_hydroxy_minus_L_minus_threonine <=> _space_4_minus_Hydroxy_minus_L_minus_threonine 
// R04210: _space_4_minus_Phospho_minus_D_minus_erythronate => _space_2_minus_Oxo_minus_3_minus_hydroxy_minus_4_minus_phosphobutanoate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E1_space_2_space_1_space_72 = 0 M;
  real E1_space_1_space_1_space_290 = 0 M;
  real E1_space_4_space_3_space_5 = 0 M;
  real E2_space_7_space_1_space_35 = 0 M;
  real E2_space_6_space_1_space_52 = 0 M;
  real E2_space_6_space_99_space_2 = 0 M;
  real E1_space_1_space_1_space_262 = 0 M;
  real E4_space_2_space_3_space_1 = 0 M;
  real D_minus_Erythrose_space_4_minus_phosphate(time) M;
  real xxx_space_4_minus_Phospho_minus_D_minus_erythronate(time) M;
  real Pyridoxal(time) M;
  real Pyridoxine(time) M;
  real Pyridoxamine(time) M;
  real xxx_space_2_minus_Oxo_minus_3_minus_hydroxy_minus_4_minus_phosphobutanoate(time) M;
  real Pyridoxal_space_phosphate(time) M;
  real Pyridoxine_space_phosphate(time) M;
  real xxx_space_3_minus_Amino_minus_2_minus_oxopropyl_space_phosphate(time) M;
  real xxx_space_2_minus_Amino_minus_3_minus_oxo_minus_4_minus_phosphonooxybutyrate(time) M;
  real O_minus_Phospho_minus_4_minus_hydroxy_minus_L_minus_threonine(time) M;
  real Pyridoxamine_space_phosphate(time) M;
  real xxx_space_4_minus_Hydroxy_minus_L_minus_threonine(time) M;
  real R05085(time) katal;
  extern real R05085.kf;
  extern real R05085.kb;
  real R01710(time) katal;
  extern real R01710.kf;
  extern real R01710.kb;
  real R05838(time) katal;
  extern real R05838.kf;
  extern real R05838.kb;
  real R01825(time) katal;
  extern real R01825.kf;
  extern real R01825.kb;
  real R05681(time) katal;
  extern real R05681.kf;
  extern real R05681.kb;
  real R00278(time) katal;
  extern real R00278.kf;
  extern real R00278.kb;
  real R01711(time) katal;
  extern real R01711.kf;
  extern real R01711.kb;
  real R00174(time) katal;
  extern real R00174.kf;
  extern real R00174.kb;
  real R00277(time) katal;
  extern real R00277.kf;
  extern real R00277.kb;
  real R01909(time) katal;
  extern real R01909.kf;
  extern real R01909.kb;
  real R02493(time) katal;
  extern real R02493.kf;
  extern real R02493.kb;
  real R05086(time) katal;
  extern real R05086.kf;
  extern real R05086.kb;
  real R04210(time) katal;
  extern real R04210.kf;
  extern real R04210.kb;

  // equations
  when (time=time.min) D_minus_Erythrose_space_4_minus_phosphate = 0;
  (D_minus_Erythrose_space_4_minus_phosphate*uVol):time = -1*R01825;
  when (time=time.min) xxx_space_4_minus_Phospho_minus_D_minus_erythronate = 0;
  (xxx_space_4_minus_Phospho_minus_D_minus_erythronate*uVol):time = R01825 + -1*R04210;
  when (time=time.min) Pyridoxal = 0;
  (Pyridoxal*uVol):time = R01710 + R01711 + -1*R00174;
  when (time=time.min) Pyridoxine = 0;
  (Pyridoxine*uVol):time = -1*R01711 + -1*R01909;
  when (time=time.min) Pyridoxamine = 0;
  (Pyridoxamine*uVol):time = -1*R01710 + -1*R02493;
  when (time=time.min) xxx_space_2_minus_Oxo_minus_3_minus_hydroxy_minus_4_minus_phosphobutanoate = 0;
  (xxx_space_2_minus_Oxo_minus_3_minus_hydroxy_minus_4_minus_phosphobutanoate*uVol):time = R05085 + R04210;
  when (time=time.min) Pyridoxal_space_phosphate = 0;
  (Pyridoxal_space_phosphate*uVol):time = R00278 + R00174 + R00277;
  when (time=time.min) Pyridoxine_space_phosphate = 0;
  (Pyridoxine_space_phosphate*uVol):time = R05838 + -1*R00278 + R01909;
  when (time=time.min) xxx_space_3_minus_Amino_minus_2_minus_oxopropyl_space_phosphate = 0;
  (xxx_space_3_minus_Amino_minus_2_minus_oxopropyl_space_phosphate*uVol):time = -1*R05838;
  when (time=time.min) xxx_space_2_minus_Amino_minus_3_minus_oxo_minus_4_minus_phosphonooxybutyrate = 0;
  (xxx_space_2_minus_Amino_minus_3_minus_oxo_minus_4_minus_phosphonooxybutyrate*uVol):time = R05681;
  when (time=time.min) O_minus_Phospho_minus_4_minus_hydroxy_minus_L_minus_threonine = 0;
  (O_minus_Phospho_minus_4_minus_hydroxy_minus_L_minus_threonine*uVol):time = -1*R05085 + -1*R05681 + -1*R05086;
  when (time=time.min) Pyridoxamine_space_phosphate = 0;
  (Pyridoxamine_space_phosphate*uVol):time = -1*R00277 + R02493;
  when (time=time.min) xxx_space_4_minus_Hydroxy_minus_L_minus_threonine = 0;
  (xxx_space_4_minus_Hydroxy_minus_L_minus_threonine*uVol):time = R05086;
  R05085 = R05085.kf*O_minus_Phospho_minus_4_minus_hydroxy_minus_L_minus_threonine - R05085.kb*_space_2_minus_Oxo_minus_3_minus_hydroxy_minus_4_minus_phosphobutanoate;
  R01710 = R01710.kf*Pyridoxamine - R01710.kb*Pyridoxal;
  R05838 = R05838.kf*_space_3_minus_Amino_minus_2_minus_oxopropyl_space_phosphate - R05838.kb*Pyridoxine_space_phosphate;
  R01825 = R01825.kf*D_minus_Erythrose_space_4_minus_phosphate - R01825.kb*_space_4_minus_Phospho_minus_D_minus_erythronate;
  R05681 = R05681.kf*O_minus_Phospho_minus_4_minus_hydroxy_minus_L_minus_threonine - R05681.kb*_space_2_minus_Amino_minus_3_minus_oxo_minus_4_minus_phosphonooxybutyrate;
  R00278 = R00278.kf*Pyridoxine_space_phosphate - R00278.kb*Pyridoxal_space_phosphate;
  R01711 = R01711.kf*Pyridoxine - R01711.kb*Pyridoxal;
  R00174 = R00174.kf*Pyridoxal - R00174.kb*Pyridoxal_space_phosphate;
  R00277 = R00277.kf*Pyridoxamine_space_phosphate - R00277.kb*Pyridoxal_space_phosphate;
  R01909 = R01909.kf*Pyridoxine - R01909.kb*Pyridoxine_space_phosphate;
  R02493 = R02493.kf*Pyridoxamine - R02493.kb*Pyridoxamine_space_phosphate;
  R05086 = R05086.kf*O_minus_Phospho_minus_4_minus_hydroxy_minus_L_minus_threonine - R05086.kb*_space_4_minus_Hydroxy_minus_L_minus_threonine;
  R04210 = R04210.kf*_space_4_minus_Phospho_minus_D_minus_erythronate - R04210.kb*_space_2_minus_Oxo_minus_3_minus_hydroxy_minus_4_minus_phosphobutanoate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E1_space_2_space_1_space_72.sbmlRole="species";
  E1_space_2_space_1_space_72.sbmlCompartment="uVol";
  E1_space_1_space_1_space_290.sbmlRole="species";
  E1_space_1_space_1_space_290.sbmlCompartment="uVol";
  E1_space_4_space_3_space_5.sbmlRole="species";
  E1_space_4_space_3_space_5.sbmlCompartment="uVol";
  E2_space_7_space_1_space_35.sbmlRole="species";
  E2_space_7_space_1_space_35.sbmlCompartment="uVol";
  E2_space_6_space_1_space_52.sbmlRole="species";
  E2_space_6_space_1_space_52.sbmlCompartment="uVol";
  E2_space_6_space_99_space_2.sbmlRole="species";
  E2_space_6_space_99_space_2.sbmlCompartment="uVol";
  E1_space_1_space_1_space_262.sbmlRole="species";
  E1_space_1_space_1_space_262.sbmlCompartment="uVol";
  E4_space_2_space_3_space_1.sbmlRole="species";
  E4_space_2_space_3_space_1.sbmlCompartment="uVol";
  D_minus_Erythrose_space_4_minus_phosphate.sbmlRole="species";
  D_minus_Erythrose_space_4_minus_phosphate.sbmlCompartment="uVol";
  xxx_space_4_minus_Phospho_minus_D_minus_erythronate.sbmlRole="species";
  xxx_space_4_minus_Phospho_minus_D_minus_erythronate.sbmlName="_space_4_minus_Phospho_minus_D_minus_erythronate";
  xxx_space_4_minus_Phospho_minus_D_minus_erythronate.sbmlCompartment="uVol";
  Pyridoxal.sbmlRole="species";
  Pyridoxal.sbmlCompartment="uVol";
  Pyridoxine.sbmlRole="species";
  Pyridoxine.sbmlCompartment="uVol";
  Pyridoxamine.sbmlRole="species";
  Pyridoxamine.sbmlCompartment="uVol";
  xxx_space_2_minus_Oxo_minus_3_minus_hydroxy_minus_4_minus_phosphobutanoate.sbmlRole="species";
  xxx_space_2_minus_Oxo_minus_3_minus_hydroxy_minus_4_minus_phosphobutanoate.sbmlName="_space_2_minus_Oxo_minus_3_minus_hydroxy_minus_4_minus_phosphobutanoate";
  xxx_space_2_minus_Oxo_minus_3_minus_hydroxy_minus_4_minus_phosphobutanoate.sbmlCompartment="uVol";
  Pyridoxal_space_phosphate.sbmlRole="species";
  Pyridoxal_space_phosphate.sbmlCompartment="uVol";
  Pyridoxine_space_phosphate.sbmlRole="species";
  Pyridoxine_space_phosphate.sbmlCompartment="uVol";
  xxx_space_3_minus_Amino_minus_2_minus_oxopropyl_space_phosphate.sbmlRole="species";
  xxx_space_3_minus_Amino_minus_2_minus_oxopropyl_space_phosphate.sbmlName="_space_3_minus_Amino_minus_2_minus_oxopropyl_space_phosphate";
  xxx_space_3_minus_Amino_minus_2_minus_oxopropyl_space_phosphate.sbmlCompartment="uVol";
  xxx_space_2_minus_Amino_minus_3_minus_oxo_minus_4_minus_phosphonooxybutyrate.sbmlRole="species";
  xxx_space_2_minus_Amino_minus_3_minus_oxo_minus_4_minus_phosphonooxybutyrate.sbmlName="_space_2_minus_Amino_minus_3_minus_oxo_minus_4_minus_phosphonooxybutyrate";
  xxx_space_2_minus_Amino_minus_3_minus_oxo_minus_4_minus_phosphonooxybutyrate.sbmlCompartment="uVol";
  O_minus_Phospho_minus_4_minus_hydroxy_minus_L_minus_threonine.sbmlRole="species";
  O_minus_Phospho_minus_4_minus_hydroxy_minus_L_minus_threonine.sbmlCompartment="uVol";
  Pyridoxamine_space_phosphate.sbmlRole="species";
  Pyridoxamine_space_phosphate.sbmlCompartment="uVol";
  xxx_space_4_minus_Hydroxy_minus_L_minus_threonine.sbmlRole="species";
  xxx_space_4_minus_Hydroxy_minus_L_minus_threonine.sbmlName="_space_4_minus_Hydroxy_minus_L_minus_threonine";
  xxx_space_4_minus_Hydroxy_minus_L_minus_threonine.sbmlCompartment="uVol";
  R05085.sbmlRole="rate";
  R05085.kf.sbmlRole="rate";
  R05085.kb.sbmlRole="rate";
  R01710.sbmlRole="rate";
  R01710.kf.sbmlRole="rate";
  R01710.kb.sbmlRole="rate";
  R05838.sbmlRole="rate";
  R05838.kf.sbmlRole="rate";
  R05838.kb.sbmlRole="rate";
  R01825.sbmlRole="rate";
  R01825.kf.sbmlRole="rate";
  R01825.kb.sbmlRole="rate";
  R05681.sbmlRole="rate";
  R05681.kf.sbmlRole="rate";
  R05681.kb.sbmlRole="rate";
  R00278.sbmlRole="rate";
  R00278.kf.sbmlRole="rate";
  R00278.kb.sbmlRole="rate";
  R01711.sbmlRole="rate";
  R01711.kf.sbmlRole="rate";
  R01711.kb.sbmlRole="rate";
  R00174.sbmlRole="rate";
  R00174.kf.sbmlRole="rate";
  R00174.kb.sbmlRole="rate";
  R00277.sbmlRole="rate";
  R00277.kf.sbmlRole="rate";
  R00277.kb.sbmlRole="rate";
  R01909.sbmlRole="rate";
  R01909.kf.sbmlRole="rate";
  R01909.kb.sbmlRole="rate";
  R02493.sbmlRole="rate";
  R02493.kf.sbmlRole="rate";
  R02493.kb.sbmlRole="rate";
  R05086.sbmlRole="rate";
  R05086.kf.sbmlRole="rate";
  R05086.kb.sbmlRole="rate";
  R04210.sbmlRole="rate";
  R04210.kf.sbmlRole="rate";
  R04210.kb.sbmlRole="rate";
}