// This model generated automatically from SBML
// WARNING: Renamed variable _alpha__minus_D_minus_Glucosamine_space_1_minus_phosphate to xxx_alpha__minus_D_minus_Glucosamine_space_1_minus_phosphate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R02059: N_minus_Acetyl_minus_D_minus_glucosamine_space_6_minus_phosphate => D_minus_Glucosamine_space_6_minus_phosphate 
// R00660: UDP_minus_N_minus_acetyl_minus_D_minus_glucosamine => UDP_minus_N_minus_acetyl_minus_3_minus__space_1_minus_carboxyvinyl_space__minus_D_minus_glucosamine 
// R00414: UDP_minus_N_minus_acetyl_minus_D_minus_glucosamine => N_minus_Acetyl_minus_D_minus_mannosamine 
// R00768: D_minus_Fructose_space_6_minus_phosphate => D_minus_Glucosamine_space_6_minus_phosphate 
// R02087: N_minus_Acetyl_minus_D_minus_glucosamine_space_6_minus_phosphate => N_minus_Acetyl_minus_D_minus_mannosamine_space_6_minus_phosphate 
// R05332: _alpha__minus_D_minus_Glucosamine_space_1_minus_phosphate <=> N_minus_Acetyl_minus__alpha__minus_D_minus_glucosamine_space_1_minus_phosphate 
// R01117: N_minus_Acetylneuraminate => CMP_minus_N_minus_acetylneuraminate 
// R01804: N_minus_Acetylneuraminate => N_minus_Acetyl_minus_D_minus_mannosamine 
// R02060: D_minus_Glucosamine_space_6_minus_phosphate <=> _alpha__minus_D_minus_Glucosamine_space_1_minus_phosphate 
// R04215: N_minus_Glycoloyl_minus_neuraminate => CMP_minus_N_minus_glycoloylneuraminate 
// R03191: UDP_minus_N_minus_acetylmuramate <=> UDP_minus_N_minus_acetyl_minus_3_minus__space_1_minus_carboxyvinyl_space__minus_D_minus_glucosamine 
// R00416: N_minus_Acetyl_minus__alpha__minus_D_minus_glucosamine_space_1_minus_phosphate => UDP_minus_N_minus_acetyl_minus_D_minus_glucosamine 
// R00420: UDP_minus_N_minus_acetyl_minus_D_minus_glucosamine => UDP_minus_N_minus_acetyl_minus_D_minus_mannosamine 
// R04435: N_minus_Acetylneuraminate_space_9_minus_phosphate => N_minus_Acetyl_minus_D_minus_mannosamine_space_6_minus_phosphate 
// R00765: D_minus_Glucosamine_space_6_minus_phosphate => D_minus_Fructose_space_6_minus_phosphate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_6_space_1_space_16 = 0 M;
  real E3_space_5_space_99_space_6 = 0 M;
  real E5_space_4_space_2_space_10 = 0 M;
  real E3_space_5_space_1_space_25 = 0 M;
  real E2_space_3_space_1_space_157 = 0 M;
  real E5_space_1_space_3_space_9 = 0 M;
  real E2_space_7_space_7_space_23 = 0 M;
  real E5_space_1_space_3_space_14 = 0 M;
  real E2_space_5_space_1_space_56 = 0 M;
  real E2_space_5_space_1_space_7 = 0 M;
  real E1_space_1_space_1_space_158 = 0 M;
  real E2_space_7_space_7_space_43 = 0 M;
  real D_minus_Glucosamine_space_6_minus_phosphate(time) M;
  real N_minus_Acetyl_minus_D_minus_glucosamine_space_6_minus_phosphate(time) M;
  real xxx_alpha__minus_D_minus_Glucosamine_space_1_minus_phosphate(time) M;
  real N_minus_Acetyl_minus__alpha__minus_D_minus_glucosamine_space_1_minus_phosphate(time) M;
  real N_minus_Acetyl_minus_D_minus_mannosamine_space_6_minus_phosphate(time) M;
  real N_minus_Acetyl_minus_D_minus_mannosamine(time) M;
  real UDP_minus_N_minus_acetyl_minus_D_minus_glucosamine(time) M;
  real D_minus_Fructose_space_6_minus_phosphate(time) M;
  real N_minus_Acetylneuraminate_space_9_minus_phosphate(time) M;
  real UDP_minus_N_minus_acetyl_minus_D_minus_mannosamine(time) M;
  real UDP_minus_N_minus_acetyl_minus_3_minus__space_1_minus_carboxyvinyl_space__minus_D_minus_glucosamine(time) M;
  real N_minus_Acetylneuraminate(time) M;
  real N_minus_Glycoloyl_minus_neuraminate(time) M;
  real UDP_minus_N_minus_acetylmuramate(time) M;
  real CMP_minus_N_minus_acetylneuraminate(time) M;
  real CMP_minus_N_minus_glycoloylneuraminate(time) M;
  real R02059(time) katal;
  extern real R02059.kf;
  extern real R02059.kb;
  real R00660(time) katal;
  extern real R00660.kf;
  extern real R00660.kb;
  real R00414(time) katal;
  extern real R00414.kf;
  extern real R00414.kb;
  real R00768(time) katal;
  extern real R00768.kf;
  extern real R00768.kb;
  real R02087(time) katal;
  extern real R02087.kf;
  extern real R02087.kb;
  real R05332(time) katal;
  extern real R05332.kf;
  extern real R05332.kb;
  real R01117(time) katal;
  extern real R01117.kf;
  extern real R01117.kb;
  real R01804(time) katal;
  extern real R01804.kf;
  extern real R01804.kb;
  real R02060(time) katal;
  extern real R02060.kf;
  extern real R02060.kb;
  real R04215(time) katal;
  extern real R04215.kf;
  extern real R04215.kb;
  real R03191(time) katal;
  extern real R03191.kf;
  extern real R03191.kb;
  real R00416(time) katal;
  extern real R00416.kf;
  extern real R00416.kb;
  real R00420(time) katal;
  extern real R00420.kf;
  extern real R00420.kb;
  real R04435(time) katal;
  extern real R04435.kf;
  extern real R04435.kb;
  real R00765(time) katal;
  extern real R00765.kf;
  extern real R00765.kb;

  // equations
  when (time=time.min) D_minus_Glucosamine_space_6_minus_phosphate = 0;
  (D_minus_Glucosamine_space_6_minus_phosphate*uVol):time = R02059 + R00768 + -1*R02060 + -1*R00765;
  when (time=time.min) N_minus_Acetyl_minus_D_minus_glucosamine_space_6_minus_phosphate = 0;
  (N_minus_Acetyl_minus_D_minus_glucosamine_space_6_minus_phosphate*uVol):time = -1*R02059 + -1*R02087;
  when (time=time.min) xxx_alpha__minus_D_minus_Glucosamine_space_1_minus_phosphate = 0;
  (xxx_alpha__minus_D_minus_Glucosamine_space_1_minus_phosphate*uVol):time = -1*R05332 + R02060;
  when (time=time.min) N_minus_Acetyl_minus__alpha__minus_D_minus_glucosamine_space_1_minus_phosphate = 0;
  (N_minus_Acetyl_minus__alpha__minus_D_minus_glucosamine_space_1_minus_phosphate*uVol):time = R05332 + -1*R00416;
  when (time=time.min) N_minus_Acetyl_minus_D_minus_mannosamine_space_6_minus_phosphate = 0;
  (N_minus_Acetyl_minus_D_minus_mannosamine_space_6_minus_phosphate*uVol):time = R02087 + R04435;
  when (time=time.min) N_minus_Acetyl_minus_D_minus_mannosamine = 0;
  (N_minus_Acetyl_minus_D_minus_mannosamine*uVol):time = R00414 + R01804;
  when (time=time.min) UDP_minus_N_minus_acetyl_minus_D_minus_glucosamine = 0;
  (UDP_minus_N_minus_acetyl_minus_D_minus_glucosamine*uVol):time = -1*R00660 + -1*R00414 + R00416 + -1*R00420;
  when (time=time.min) D_minus_Fructose_space_6_minus_phosphate = 0;
  (D_minus_Fructose_space_6_minus_phosphate*uVol):time = -1*R00768 + R00765;
  when (time=time.min) N_minus_Acetylneuraminate_space_9_minus_phosphate = 0;
  (N_minus_Acetylneuraminate_space_9_minus_phosphate*uVol):time = -1*R04435;
  when (time=time.min) UDP_minus_N_minus_acetyl_minus_D_minus_mannosamine = 0;
  (UDP_minus_N_minus_acetyl_minus_D_minus_mannosamine*uVol):time = R00420;
  when (time=time.min) UDP_minus_N_minus_acetyl_minus_3_minus__space_1_minus_carboxyvinyl_space__minus_D_minus_glucosamine = 0;
  (UDP_minus_N_minus_acetyl_minus_3_minus__space_1_minus_carboxyvinyl_space__minus_D_minus_glucosamine*uVol):time = R00660 + R03191;
  when (time=time.min) N_minus_Acetylneuraminate = 0;
  (N_minus_Acetylneuraminate*uVol):time = -1*R01117 + -1*R01804;
  when (time=time.min) N_minus_Glycoloyl_minus_neuraminate = 0;
  (N_minus_Glycoloyl_minus_neuraminate*uVol):time = -1*R04215;
  when (time=time.min) UDP_minus_N_minus_acetylmuramate = 0;
  (UDP_minus_N_minus_acetylmuramate*uVol):time = -1*R03191;
  when (time=time.min) CMP_minus_N_minus_acetylneuraminate = 0;
  (CMP_minus_N_minus_acetylneuraminate*uVol):time = R01117;
  when (time=time.min) CMP_minus_N_minus_glycoloylneuraminate = 0;
  (CMP_minus_N_minus_glycoloylneuraminate*uVol):time = R04215;
  R02059 = R02059.kf*N_minus_Acetyl_minus_D_minus_glucosamine_space_6_minus_phosphate - R02059.kb*D_minus_Glucosamine_space_6_minus_phosphate;
  R00660 = R00660.kf*UDP_minus_N_minus_acetyl_minus_D_minus_glucosamine - R00660.kb*UDP_minus_N_minus_acetyl_minus_3_minus__space_1_minus_carboxyvinyl_space__minus_D_minus_glucosamine;
  R00414 = R00414.kf*UDP_minus_N_minus_acetyl_minus_D_minus_glucosamine - R00414.kb*N_minus_Acetyl_minus_D_minus_mannosamine;
  R00768 = R00768.kf*D_minus_Fructose_space_6_minus_phosphate - R00768.kb*D_minus_Glucosamine_space_6_minus_phosphate;
  R02087 = R02087.kf*N_minus_Acetyl_minus_D_minus_glucosamine_space_6_minus_phosphate - R02087.kb*N_minus_Acetyl_minus_D_minus_mannosamine_space_6_minus_phosphate;
  R05332 = R05332.kf*_alpha__minus_D_minus_Glucosamine_space_1_minus_phosphate - R05332.kb*N_minus_Acetyl_minus__alpha__minus_D_minus_glucosamine_space_1_minus_phosphate;
  R01117 = R01117.kf*N_minus_Acetylneuraminate - R01117.kb*CMP_minus_N_minus_acetylneuraminate;
  R01804 = R01804.kf*N_minus_Acetylneuraminate - R01804.kb*N_minus_Acetyl_minus_D_minus_mannosamine;
  R02060 = R02060.kf*D_minus_Glucosamine_space_6_minus_phosphate - R02060.kb*_alpha__minus_D_minus_Glucosamine_space_1_minus_phosphate;
  R04215 = R04215.kf*N_minus_Glycoloyl_minus_neuraminate - R04215.kb*CMP_minus_N_minus_glycoloylneuraminate;
  R03191 = R03191.kf*UDP_minus_N_minus_acetylmuramate - R03191.kb*UDP_minus_N_minus_acetyl_minus_3_minus__space_1_minus_carboxyvinyl_space__minus_D_minus_glucosamine;
  R00416 = R00416.kf*N_minus_Acetyl_minus__alpha__minus_D_minus_glucosamine_space_1_minus_phosphate - R00416.kb*UDP_minus_N_minus_acetyl_minus_D_minus_glucosamine;
  R00420 = R00420.kf*UDP_minus_N_minus_acetyl_minus_D_minus_glucosamine - R00420.kb*UDP_minus_N_minus_acetyl_minus_D_minus_mannosamine;
  R04435 = R04435.kf*N_minus_Acetylneuraminate_space_9_minus_phosphate - R04435.kb*N_minus_Acetyl_minus_D_minus_mannosamine_space_6_minus_phosphate;
  R00765 = R00765.kf*D_minus_Glucosamine_space_6_minus_phosphate - R00765.kb*D_minus_Fructose_space_6_minus_phosphate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_6_space_1_space_16.sbmlRole="species";
  E2_space_6_space_1_space_16.sbmlCompartment="uVol";
  E3_space_5_space_99_space_6.sbmlRole="species";
  E3_space_5_space_99_space_6.sbmlCompartment="uVol";
  E5_space_4_space_2_space_10.sbmlRole="species";
  E5_space_4_space_2_space_10.sbmlCompartment="uVol";
  E3_space_5_space_1_space_25.sbmlRole="species";
  E3_space_5_space_1_space_25.sbmlCompartment="uVol";
  E2_space_3_space_1_space_157.sbmlRole="species";
  E2_space_3_space_1_space_157.sbmlCompartment="uVol";
  E5_space_1_space_3_space_9.sbmlRole="species";
  E5_space_1_space_3_space_9.sbmlCompartment="uVol";
  E2_space_7_space_7_space_23.sbmlRole="species";
  E2_space_7_space_7_space_23.sbmlCompartment="uVol";
  E5_space_1_space_3_space_14.sbmlRole="species";
  E5_space_1_space_3_space_14.sbmlCompartment="uVol";
  E2_space_5_space_1_space_56.sbmlRole="species";
  E2_space_5_space_1_space_56.sbmlCompartment="uVol";
  E2_space_5_space_1_space_7.sbmlRole="species";
  E2_space_5_space_1_space_7.sbmlCompartment="uVol";
  E1_space_1_space_1_space_158.sbmlRole="species";
  E1_space_1_space_1_space_158.sbmlCompartment="uVol";
  E2_space_7_space_7_space_43.sbmlRole="species";
  E2_space_7_space_7_space_43.sbmlCompartment="uVol";
  D_minus_Glucosamine_space_6_minus_phosphate.sbmlRole="species";
  D_minus_Glucosamine_space_6_minus_phosphate.sbmlCompartment="uVol";
  N_minus_Acetyl_minus_D_minus_glucosamine_space_6_minus_phosphate.sbmlRole="species";
  N_minus_Acetyl_minus_D_minus_glucosamine_space_6_minus_phosphate.sbmlCompartment="uVol";
  xxx_alpha__minus_D_minus_Glucosamine_space_1_minus_phosphate.sbmlRole="species";
  xxx_alpha__minus_D_minus_Glucosamine_space_1_minus_phosphate.sbmlName="_alpha__minus_D_minus_Glucosamine_space_1_minus_phosphate";
  xxx_alpha__minus_D_minus_Glucosamine_space_1_minus_phosphate.sbmlCompartment="uVol";
  N_minus_Acetyl_minus__alpha__minus_D_minus_glucosamine_space_1_minus_phosphate.sbmlRole="species";
  N_minus_Acetyl_minus__alpha__minus_D_minus_glucosamine_space_1_minus_phosphate.sbmlCompartment="uVol";
  N_minus_Acetyl_minus_D_minus_mannosamine_space_6_minus_phosphate.sbmlRole="species";
  N_minus_Acetyl_minus_D_minus_mannosamine_space_6_minus_phosphate.sbmlCompartment="uVol";
  N_minus_Acetyl_minus_D_minus_mannosamine.sbmlRole="species";
  N_minus_Acetyl_minus_D_minus_mannosamine.sbmlCompartment="uVol";
  UDP_minus_N_minus_acetyl_minus_D_minus_glucosamine.sbmlRole="species";
  UDP_minus_N_minus_acetyl_minus_D_minus_glucosamine.sbmlCompartment="uVol";
  D_minus_Fructose_space_6_minus_phosphate.sbmlRole="species";
  D_minus_Fructose_space_6_minus_phosphate.sbmlCompartment="uVol";
  N_minus_Acetylneuraminate_space_9_minus_phosphate.sbmlRole="species";
  N_minus_Acetylneuraminate_space_9_minus_phosphate.sbmlCompartment="uVol";
  UDP_minus_N_minus_acetyl_minus_D_minus_mannosamine.sbmlRole="species";
  UDP_minus_N_minus_acetyl_minus_D_minus_mannosamine.sbmlCompartment="uVol";
  UDP_minus_N_minus_acetyl_minus_3_minus__space_1_minus_carboxyvinyl_space__minus_D_minus_glucosamine.sbmlRole="species";
  UDP_minus_N_minus_acetyl_minus_3_minus__space_1_minus_carboxyvinyl_space__minus_D_minus_glucosamine.sbmlCompartment="uVol";
  N_minus_Acetylneuraminate.sbmlRole="species";
  N_minus_Acetylneuraminate.sbmlCompartment="uVol";
  N_minus_Glycoloyl_minus_neuraminate.sbmlRole="species";
  N_minus_Glycoloyl_minus_neuraminate.sbmlCompartment="uVol";
  UDP_minus_N_minus_acetylmuramate.sbmlRole="species";
  UDP_minus_N_minus_acetylmuramate.sbmlCompartment="uVol";
  CMP_minus_N_minus_acetylneuraminate.sbmlRole="species";
  CMP_minus_N_minus_acetylneuraminate.sbmlCompartment="uVol";
  CMP_minus_N_minus_glycoloylneuraminate.sbmlRole="species";
  CMP_minus_N_minus_glycoloylneuraminate.sbmlCompartment="uVol";
  R02059.sbmlRole="rate";
  R02059.kf.sbmlRole="rate";
  R02059.kb.sbmlRole="rate";
  R00660.sbmlRole="rate";
  R00660.kf.sbmlRole="rate";
  R00660.kb.sbmlRole="rate";
  R00414.sbmlRole="rate";
  R00414.kf.sbmlRole="rate";
  R00414.kb.sbmlRole="rate";
  R00768.sbmlRole="rate";
  R00768.kf.sbmlRole="rate";
  R00768.kb.sbmlRole="rate";
  R02087.sbmlRole="rate";
  R02087.kf.sbmlRole="rate";
  R02087.kb.sbmlRole="rate";
  R05332.sbmlRole="rate";
  R05332.kf.sbmlRole="rate";
  R05332.kb.sbmlRole="rate";
  R01117.sbmlRole="rate";
  R01117.kf.sbmlRole="rate";
  R01117.kb.sbmlRole="rate";
  R01804.sbmlRole="rate";
  R01804.kf.sbmlRole="rate";
  R01804.kb.sbmlRole="rate";
  R02060.sbmlRole="rate";
  R02060.kf.sbmlRole="rate";
  R02060.kb.sbmlRole="rate";
  R04215.sbmlRole="rate";
  R04215.kf.sbmlRole="rate";
  R04215.kb.sbmlRole="rate";
  R03191.sbmlRole="rate";
  R03191.kf.sbmlRole="rate";
  R03191.kb.sbmlRole="rate";
  R00416.sbmlRole="rate";
  R00416.kf.sbmlRole="rate";
  R00416.kb.sbmlRole="rate";
  R00420.sbmlRole="rate";
  R00420.kf.sbmlRole="rate";
  R00420.kb.sbmlRole="rate";
  R04435.sbmlRole="rate";
  R04435.kf.sbmlRole="rate";
  R04435.kb.sbmlRole="rate";
  R00765.sbmlRole="rate";
  R00765.kf.sbmlRole="rate";
  R00765.kb.sbmlRole="rate";
}