// This model generated automatically from SBML
// WARNING: Renamed variable _space_2_minus_Chloromaleylacetate to xxx_space_2_minus_Chloromaleylacetate due to JSim namespace restrictions
// WARNING: Renamed variable _space_4_minus_Hydroxy_minus_2_minus_oxopentanoate to xxx_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_Maleylacetate to xxx_space_2_minus_Maleylacetate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R05511: cis_minus_2_minus_Chloro_minus_4_minus_carboxymethylenebut_minus_2_minus_en_minus_1_space_4_minus_olide <=> _space_2_minus_Chloromaleylacetate 
// R05510: Protoanemonin <=> cis_minus_Acetylacrylate 
// R03893: cis_minus_4_minus_Carboxymethylenebut_minus_2_minus_en_minus_4_minus_olide <=> _space_2_minus_Maleylacetate 
// R00750: Acetaldehyde Pyruvate <=> _space_4_minus_Hydroxy_minus_2_minus_oxopentanoate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E3_space_1_space_1_space_45 = 0 M;
  real E4_space_1_space_3_space_39 = 0 M;
  real Protoanemonin(time) M;
  real cis_minus_Acetylacrylate(time) M;
  real cis_minus_2_minus_Chloro_minus_4_minus_carboxymethylenebut_minus_2_minus_en_minus_1_space_4_minus_olide(time) M;
  real xxx_space_2_minus_Chloromaleylacetate(time) M;
  real cis_minus_4_minus_Carboxymethylenebut_minus_2_minus_en_minus_4_minus_olide(time) M;
  real xxx_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate(time) M;
  real xxx_space_2_minus_Maleylacetate(time) M;
  real Acetaldehyde(time) M;
  real Pyruvate(time) M;
  real R05511(time) katal;
  extern real R05511.kf;
  extern real R05511.kb;
  real R05510(time) katal;
  extern real R05510.kf;
  extern real R05510.kb;
  real R03893(time) katal;
  extern real R03893.kf;
  extern real R03893.kb;
  real R00750(time) katal;
  extern real R00750.kf;
  extern real R00750.kb;

  // equations
  when (time=time.min) Protoanemonin = 0;
  (Protoanemonin*uVol):time = -1*R05510;
  when (time=time.min) cis_minus_Acetylacrylate = 0;
  (cis_minus_Acetylacrylate*uVol):time = R05510;
  when (time=time.min) cis_minus_2_minus_Chloro_minus_4_minus_carboxymethylenebut_minus_2_minus_en_minus_1_space_4_minus_olide = 0;
  (cis_minus_2_minus_Chloro_minus_4_minus_carboxymethylenebut_minus_2_minus_en_minus_1_space_4_minus_olide*uVol):time = -1*R05511;
  when (time=time.min) xxx_space_2_minus_Chloromaleylacetate = 0;
  (xxx_space_2_minus_Chloromaleylacetate*uVol):time = R05511;
  when (time=time.min) cis_minus_4_minus_Carboxymethylenebut_minus_2_minus_en_minus_4_minus_olide = 0;
  (cis_minus_4_minus_Carboxymethylenebut_minus_2_minus_en_minus_4_minus_olide*uVol):time = -1*R03893;
  when (time=time.min) xxx_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate = 0;
  (xxx_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate*uVol):time = R00750;
  when (time=time.min) xxx_space_2_minus_Maleylacetate = 0;
  (xxx_space_2_minus_Maleylacetate*uVol):time = R03893;
  when (time=time.min) Acetaldehyde = 0;
  (Acetaldehyde*uVol):time = -1*R00750;
  when (time=time.min) Pyruvate = 0;
  (Pyruvate*uVol):time = -1*R00750;
  R05511 = R05511.kf*cis_minus_2_minus_Chloro_minus_4_minus_carboxymethylenebut_minus_2_minus_en_minus_1_space_4_minus_olide - R05511.kb*_space_2_minus_Chloromaleylacetate;
  R05510 = R05510.kf*Protoanemonin - R05510.kb*cis_minus_Acetylacrylate;
  R03893 = R03893.kf*cis_minus_4_minus_Carboxymethylenebut_minus_2_minus_en_minus_4_minus_olide - R03893.kb*_space_2_minus_Maleylacetate;
  R00750 = R00750.kf*Acetaldehyde*Pyruvate - R00750.kb*_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E3_space_1_space_1_space_45.sbmlRole="species";
  E3_space_1_space_1_space_45.sbmlCompartment="uVol";
  E4_space_1_space_3_space_39.sbmlRole="species";
  E4_space_1_space_3_space_39.sbmlCompartment="uVol";
  Protoanemonin.sbmlRole="species";
  Protoanemonin.sbmlCompartment="uVol";
  cis_minus_Acetylacrylate.sbmlRole="species";
  cis_minus_Acetylacrylate.sbmlCompartment="uVol";
  cis_minus_2_minus_Chloro_minus_4_minus_carboxymethylenebut_minus_2_minus_en_minus_1_space_4_minus_olide.sbmlRole="species";
  cis_minus_2_minus_Chloro_minus_4_minus_carboxymethylenebut_minus_2_minus_en_minus_1_space_4_minus_olide.sbmlCompartment="uVol";
  xxx_space_2_minus_Chloromaleylacetate.sbmlRole="species";
  xxx_space_2_minus_Chloromaleylacetate.sbmlName="_space_2_minus_Chloromaleylacetate";
  xxx_space_2_minus_Chloromaleylacetate.sbmlCompartment="uVol";
  cis_minus_4_minus_Carboxymethylenebut_minus_2_minus_en_minus_4_minus_olide.sbmlRole="species";
  cis_minus_4_minus_Carboxymethylenebut_minus_2_minus_en_minus_4_minus_olide.sbmlCompartment="uVol";
  xxx_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate.sbmlRole="species";
  xxx_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate.sbmlName="_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate";
  xxx_space_4_minus_Hydroxy_minus_2_minus_oxopentanoate.sbmlCompartment="uVol";
  xxx_space_2_minus_Maleylacetate.sbmlRole="species";
  xxx_space_2_minus_Maleylacetate.sbmlName="_space_2_minus_Maleylacetate";
  xxx_space_2_minus_Maleylacetate.sbmlCompartment="uVol";
  Acetaldehyde.sbmlRole="species";
  Acetaldehyde.sbmlCompartment="uVol";
  Pyruvate.sbmlRole="species";
  Pyruvate.sbmlCompartment="uVol";
  R05511.sbmlRole="rate";
  R05511.kf.sbmlRole="rate";
  R05511.kb.sbmlRole="rate";
  R05510.sbmlRole="rate";
  R05510.kf.sbmlRole="rate";
  R05510.kb.sbmlRole="rate";
  R03893.sbmlRole="rate";
  R03893.kf.sbmlRole="rate";
  R03893.kb.sbmlRole="rate";
  R00750.sbmlRole="rate";
  R00750.kf.sbmlRole="rate";
  R00750.kb.sbmlRole="rate";
}