// This model generated automatically from SBML
// WARNING: Renamed variable _gamma__minus_Glutamyl_minus_Se_minus_methylselenocysteine to xxx_gamma__minus_Glutamyl_minus_Se_minus_methylselenocysteine due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R04941: Selenocystathionine <=> Selenohomocysteine 
// R03601: O_minus_Acetyl_minus_L_minus_serine Selenide <=> Selenocysteine Acetate 
// R04935: Se_minus_Methylselenocysteine <=> _gamma__minus_Glutamyl_minus_Se_minus_methylselenocysteine 
// R04936: Se_minus_Adenosylselenohomocysteine <=> Selenohomocysteine 
// R04771: Selenomethionine <=> Se_minus_Adenosylselenomethionine 
// R04773: Selenomethionine <=> Selenomethionyl_minus_tRNA_space_Met_space_ 
// R04939: Se_minus_Adenosylselenomethionine <=> Se_minus_Adenosylselenohomocysteine 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E2_space_3_space_2_space_2 = 0 M;
  real E6_space_1_space_1_space_10 = 0 M;
  real E4_space_4_space_1_space_8 = 0 M;
  real E2_space_5_space_1_space_6 = 0 M;
  real E3_space_3_space_1_space_1 = 0 M;
  real E2_space_1_space_1_space__minus_ = 0 M;
  real E2_space_5_space_1_space_47 = 0 M;
  real xxx_gamma__minus_Glutamyl_minus_Se_minus_methylselenocysteine(time) M;
  real Selenomethionyl_minus_tRNA_space_Met_space_(time) M;
  real Se_minus_Methylselenocysteine(time) M;
  real Selenocysteine(time) M;
  real Selenocystathionine(time) M;
  real Selenohomocysteine(time) M;
  real Selenomethionine(time) M;
  real Se_minus_Adenosylselenohomocysteine(time) M;
  real Se_minus_Adenosylselenomethionine(time) M;
  real Acetate(time) M;
  real O_minus_Acetyl_minus_L_minus_serine(time) M;
  real Selenide(time) M;
  real R04941(time) katal;
  extern real R04941.kf;
  extern real R04941.kb;
  real R03601(time) katal;
  extern real R03601.kf;
  extern real R03601.kb;
  real R04935(time) katal;
  extern real R04935.kf;
  extern real R04935.kb;
  real R04936(time) katal;
  extern real R04936.kf;
  extern real R04936.kb;
  real R04771(time) katal;
  extern real R04771.kf;
  extern real R04771.kb;
  real R04773(time) katal;
  extern real R04773.kf;
  extern real R04773.kb;
  real R04939(time) katal;
  extern real R04939.kf;
  extern real R04939.kb;

  // equations
  when (time=time.min) xxx_gamma__minus_Glutamyl_minus_Se_minus_methylselenocysteine = 0;
  (xxx_gamma__minus_Glutamyl_minus_Se_minus_methylselenocysteine*uVol):time = R04935;
  when (time=time.min) Selenomethionyl_minus_tRNA_space_Met_space_ = 0;
  (Selenomethionyl_minus_tRNA_space_Met_space_*uVol):time = R04773;
  when (time=time.min) Se_minus_Methylselenocysteine = 0;
  (Se_minus_Methylselenocysteine*uVol):time = -1*R04935;
  when (time=time.min) Selenocysteine = 0;
  (Selenocysteine*uVol):time = R03601;
  when (time=time.min) Selenocystathionine = 0;
  (Selenocystathionine*uVol):time = -1*R04941;
  when (time=time.min) Selenohomocysteine = 0;
  (Selenohomocysteine*uVol):time = R04941 + R04936;
  when (time=time.min) Selenomethionine = 0;
  (Selenomethionine*uVol):time = -1*R04771 + -1*R04773;
  when (time=time.min) Se_minus_Adenosylselenohomocysteine = 0;
  (Se_minus_Adenosylselenohomocysteine*uVol):time = -1*R04936 + R04939;
  when (time=time.min) Se_minus_Adenosylselenomethionine = 0;
  (Se_minus_Adenosylselenomethionine*uVol):time = R04771 + -1*R04939;
  when (time=time.min) Acetate = 0;
  (Acetate*uVol):time = R03601;
  when (time=time.min) O_minus_Acetyl_minus_L_minus_serine = 0;
  (O_minus_Acetyl_minus_L_minus_serine*uVol):time = -1*R03601;
  when (time=time.min) Selenide = 0;
  (Selenide*uVol):time = -1*R03601;
  R04941 = R04941.kf*Selenocystathionine - R04941.kb*Selenohomocysteine;
  R03601 = R03601.kf*O_minus_Acetyl_minus_L_minus_serine*Selenide - R03601.kb*Selenocysteine*Acetate;
  R04935 = R04935.kf*Se_minus_Methylselenocysteine - R04935.kb*_gamma__minus_Glutamyl_minus_Se_minus_methylselenocysteine;
  R04936 = R04936.kf*Se_minus_Adenosylselenohomocysteine - R04936.kb*Selenohomocysteine;
  R04771 = R04771.kf*Selenomethionine - R04771.kb*Se_minus_Adenosylselenomethionine;
  R04773 = R04773.kf*Selenomethionine - R04773.kb*Selenomethionyl_minus_tRNA_space_Met_space_;
  R04939 = R04939.kf*Se_minus_Adenosylselenomethionine - R04939.kb*Se_minus_Adenosylselenohomocysteine;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E2_space_3_space_2_space_2.sbmlRole="species";
  E2_space_3_space_2_space_2.sbmlCompartment="uVol";
  E6_space_1_space_1_space_10.sbmlRole="species";
  E6_space_1_space_1_space_10.sbmlCompartment="uVol";
  E4_space_4_space_1_space_8.sbmlRole="species";
  E4_space_4_space_1_space_8.sbmlCompartment="uVol";
  E2_space_5_space_1_space_6.sbmlRole="species";
  E2_space_5_space_1_space_6.sbmlCompartment="uVol";
  E3_space_3_space_1_space_1.sbmlRole="species";
  E3_space_3_space_1_space_1.sbmlCompartment="uVol";
  E2_space_1_space_1_space__minus_.sbmlRole="species";
  E2_space_1_space_1_space__minus_.sbmlCompartment="uVol";
  E2_space_5_space_1_space_47.sbmlRole="species";
  E2_space_5_space_1_space_47.sbmlCompartment="uVol";
  xxx_gamma__minus_Glutamyl_minus_Se_minus_methylselenocysteine.sbmlRole="species";
  xxx_gamma__minus_Glutamyl_minus_Se_minus_methylselenocysteine.sbmlName="_gamma__minus_Glutamyl_minus_Se_minus_methylselenocysteine";
  xxx_gamma__minus_Glutamyl_minus_Se_minus_methylselenocysteine.sbmlCompartment="uVol";
  Selenomethionyl_minus_tRNA_space_Met_space_.sbmlRole="species";
  Selenomethionyl_minus_tRNA_space_Met_space_.sbmlCompartment="uVol";
  Se_minus_Methylselenocysteine.sbmlRole="species";
  Se_minus_Methylselenocysteine.sbmlCompartment="uVol";
  Selenocysteine.sbmlRole="species";
  Selenocysteine.sbmlCompartment="uVol";
  Selenocystathionine.sbmlRole="species";
  Selenocystathionine.sbmlCompartment="uVol";
  Selenohomocysteine.sbmlRole="species";
  Selenohomocysteine.sbmlCompartment="uVol";
  Selenomethionine.sbmlRole="species";
  Selenomethionine.sbmlCompartment="uVol";
  Se_minus_Adenosylselenohomocysteine.sbmlRole="species";
  Se_minus_Adenosylselenohomocysteine.sbmlCompartment="uVol";
  Se_minus_Adenosylselenomethionine.sbmlRole="species";
  Se_minus_Adenosylselenomethionine.sbmlCompartment="uVol";
  Acetate.sbmlRole="species";
  Acetate.sbmlCompartment="uVol";
  O_minus_Acetyl_minus_L_minus_serine.sbmlRole="species";
  O_minus_Acetyl_minus_L_minus_serine.sbmlCompartment="uVol";
  Selenide.sbmlRole="species";
  Selenide.sbmlCompartment="uVol";
  R04941.sbmlRole="rate";
  R04941.kf.sbmlRole="rate";
  R04941.kb.sbmlRole="rate";
  R03601.sbmlRole="rate";
  R03601.kf.sbmlRole="rate";
  R03601.kb.sbmlRole="rate";
  R04935.sbmlRole="rate";
  R04935.kf.sbmlRole="rate";
  R04935.kb.sbmlRole="rate";
  R04936.sbmlRole="rate";
  R04936.kf.sbmlRole="rate";
  R04936.kb.sbmlRole="rate";
  R04771.sbmlRole="rate";
  R04771.kf.sbmlRole="rate";
  R04771.kb.sbmlRole="rate";
  R04773.sbmlRole="rate";
  R04773.kf.sbmlRole="rate";
  R04773.kb.sbmlRole="rate";
  R04939.sbmlRole="rate";
  R04939.kf.sbmlRole="rate";
  R04939.kb.sbmlRole="rate";
}