// This model generated automatically from SBML
// WARNING: Renamed variable _space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate to xxx_space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate to xxx_space_2_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate due to JSim namespace restrictions
// WARNING: Renamed variable _space_1_space_2_minus_Diacyl_minus_sn_minus_glycerol to xxx_space_1_space_2_minus_Diacyl_minus_sn_minus_glycerol due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R06872: sn_minus_Glycerol_space_3_minus_phosphate Acyl_minus_CoA <=> _space_2_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate 
// R02241: Phosphatidate <=> _space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate Acyl_minus_CoA 
// R00848: sn_minus_Glycerol_space_3_minus_phosphate => Glycerone_space_phosphate 
// R00842: sn_minus_Glycerol_space_3_minus_phosphate => Glycerone_space_phosphate 
// R01799: Phosphatidate <=> CDP_minus_diacylglycerol 
// R02240: _space_1_space_2_minus_Diacyl_minus_sn_minus_glycerol <=> Phosphatidate 
// R01801: CDP_minus_diacylglycerol <=> Phosphatidylglycerophosphate 
// R01470: sn_minus_glycero_minus_3_minus_Phosphoethanolamine <=> sn_minus_Glycerol_space_3_minus_phosphate Ethanolamine 
// R01030: sn_minus_glycero_minus_3_minus_Phosphocholine <=> Choline sn_minus_Glycerol_space_3_minus_phosphate 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E1_space_1_space_1_space_94 = 0 M;
  real E1_space_1_space_99_space_5 = 0 M;
  real E2_space_3_space_1_space_51 = 0 M;
  real E2_space_7_space_8_space_5 = 0 M;
  real E2_space_3_space_1_space__minus_ = 0 M;
  real E2_space_7_space_7_space_41 = 0 M;
  real E2_space_7_space_1_space_107 = 0 M;
  real E3_space_1_space_4_space_46 = 0 M;
  real Ethanolamine(time) M;
  real Choline(time) M;
  real sn_minus_Glycerol_space_3_minus_phosphate(time) M;
  real Glycerone_space_phosphate(time) M;
  real Acyl_minus_CoA(time) M;
  real xxx_space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate(time) M;
  real CDP_minus_diacylglycerol(time) M;
  real Phosphatidylglycerophosphate(time) M;
  real xxx_space_2_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate(time) M;
  real Phosphatidate(time) M;
  real xxx_space_1_space_2_minus_Diacyl_minus_sn_minus_glycerol(time) M;
  real sn_minus_glycero_minus_3_minus_Phosphoethanolamine(time) M;
  real sn_minus_glycero_minus_3_minus_Phosphocholine(time) M;
  real R06872(time) katal;
  extern real R06872.kf;
  extern real R06872.kb;
  real R02241(time) katal;
  extern real R02241.kf;
  extern real R02241.kb;
  real R00848(time) katal;
  extern real R00848.kf;
  extern real R00848.kb;
  real R00842(time) katal;
  extern real R00842.kf;
  extern real R00842.kb;
  real R01799(time) katal;
  extern real R01799.kf;
  extern real R01799.kb;
  real R02240(time) katal;
  extern real R02240.kf;
  extern real R02240.kb;
  real R01801(time) katal;
  extern real R01801.kf;
  extern real R01801.kb;
  real R01470(time) katal;
  extern real R01470.kf;
  extern real R01470.kb;
  real R01030(time) katal;
  extern real R01030.kf;
  extern real R01030.kb;

  // equations
  when (time=time.min) Ethanolamine = 0;
  (Ethanolamine*uVol):time = R01470;
  when (time=time.min) Choline = 0;
  (Choline*uVol):time = R01030;
  when (time=time.min) sn_minus_Glycerol_space_3_minus_phosphate = 0;
  (sn_minus_Glycerol_space_3_minus_phosphate*uVol):time = -1*R06872 + -1*R00848 + -1*R00842 + R01470 + R01030;
  when (time=time.min) Glycerone_space_phosphate = 0;
  (Glycerone_space_phosphate*uVol):time = R00848 + R00842;
  when (time=time.min) Acyl_minus_CoA = 0;
  (Acyl_minus_CoA*uVol):time = -1*R06872 + R02241;
  when (time=time.min) xxx_space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate = 0;
  (xxx_space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate*uVol):time = R02241;
  when (time=time.min) CDP_minus_diacylglycerol = 0;
  (CDP_minus_diacylglycerol*uVol):time = R01799 + -1*R01801;
  when (time=time.min) Phosphatidylglycerophosphate = 0;
  (Phosphatidylglycerophosphate*uVol):time = R01801;
  when (time=time.min) xxx_space_2_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate = 0;
  (xxx_space_2_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate*uVol):time = R06872;
  when (time=time.min) Phosphatidate = 0;
  (Phosphatidate*uVol):time = -1*R02241 + -1*R01799 + R02240;
  when (time=time.min) xxx_space_1_space_2_minus_Diacyl_minus_sn_minus_glycerol = 0;
  (xxx_space_1_space_2_minus_Diacyl_minus_sn_minus_glycerol*uVol):time = -1*R02240;
  when (time=time.min) sn_minus_glycero_minus_3_minus_Phosphoethanolamine = 0;
  (sn_minus_glycero_minus_3_minus_Phosphoethanolamine*uVol):time = -1*R01470;
  when (time=time.min) sn_minus_glycero_minus_3_minus_Phosphocholine = 0;
  (sn_minus_glycero_minus_3_minus_Phosphocholine*uVol):time = -1*R01030;
  R06872 = R06872.kf*sn_minus_Glycerol_space_3_minus_phosphate*Acyl_minus_CoA - R06872.kb*_space_2_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate;
  R02241 = R02241.kf*Phosphatidate - R02241.kb*_space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate*Acyl_minus_CoA;
  R00848 = R00848.kf*sn_minus_Glycerol_space_3_minus_phosphate - R00848.kb*Glycerone_space_phosphate;
  R00842 = R00842.kf*sn_minus_Glycerol_space_3_minus_phosphate - R00842.kb*Glycerone_space_phosphate;
  R01799 = R01799.kf*Phosphatidate - R01799.kb*CDP_minus_diacylglycerol;
  R02240 = R02240.kf*_space_1_space_2_minus_Diacyl_minus_sn_minus_glycerol - R02240.kb*Phosphatidate;
  R01801 = R01801.kf*CDP_minus_diacylglycerol - R01801.kb*Phosphatidylglycerophosphate;
  R01470 = R01470.kf*sn_minus_glycero_minus_3_minus_Phosphoethanolamine - R01470.kb*sn_minus_Glycerol_space_3_minus_phosphate*Ethanolamine;
  R01030 = R01030.kf*sn_minus_glycero_minus_3_minus_Phosphocholine - R01030.kb*Choline*sn_minus_Glycerol_space_3_minus_phosphate;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E1_space_1_space_1_space_94.sbmlRole="species";
  E1_space_1_space_1_space_94.sbmlCompartment="uVol";
  E1_space_1_space_99_space_5.sbmlRole="species";
  E1_space_1_space_99_space_5.sbmlCompartment="uVol";
  E2_space_3_space_1_space_51.sbmlRole="species";
  E2_space_3_space_1_space_51.sbmlCompartment="uVol";
  E2_space_7_space_8_space_5.sbmlRole="species";
  E2_space_7_space_8_space_5.sbmlCompartment="uVol";
  E2_space_3_space_1_space__minus_.sbmlRole="species";
  E2_space_3_space_1_space__minus_.sbmlCompartment="uVol";
  E2_space_7_space_7_space_41.sbmlRole="species";
  E2_space_7_space_7_space_41.sbmlCompartment="uVol";
  E2_space_7_space_1_space_107.sbmlRole="species";
  E2_space_7_space_1_space_107.sbmlCompartment="uVol";
  E3_space_1_space_4_space_46.sbmlRole="species";
  E3_space_1_space_4_space_46.sbmlCompartment="uVol";
  Ethanolamine.sbmlRole="species";
  Ethanolamine.sbmlCompartment="uVol";
  Choline.sbmlRole="species";
  Choline.sbmlCompartment="uVol";
  sn_minus_Glycerol_space_3_minus_phosphate.sbmlRole="species";
  sn_minus_Glycerol_space_3_minus_phosphate.sbmlCompartment="uVol";
  Glycerone_space_phosphate.sbmlRole="species";
  Glycerone_space_phosphate.sbmlCompartment="uVol";
  Acyl_minus_CoA.sbmlRole="species";
  Acyl_minus_CoA.sbmlCompartment="uVol";
  xxx_space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate.sbmlRole="species";
  xxx_space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate.sbmlName="_space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate";
  xxx_space_1_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate.sbmlCompartment="uVol";
  CDP_minus_diacylglycerol.sbmlRole="species";
  CDP_minus_diacylglycerol.sbmlCompartment="uVol";
  Phosphatidylglycerophosphate.sbmlRole="species";
  Phosphatidylglycerophosphate.sbmlCompartment="uVol";
  xxx_space_2_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate.sbmlRole="species";
  xxx_space_2_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate.sbmlName="_space_2_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate";
  xxx_space_2_minus_Acyl_minus_sn_minus_glycerol_space_3_minus_phosphate.sbmlCompartment="uVol";
  Phosphatidate.sbmlRole="species";
  Phosphatidate.sbmlCompartment="uVol";
  xxx_space_1_space_2_minus_Diacyl_minus_sn_minus_glycerol.sbmlRole="species";
  xxx_space_1_space_2_minus_Diacyl_minus_sn_minus_glycerol.sbmlName="_space_1_space_2_minus_Diacyl_minus_sn_minus_glycerol";
  xxx_space_1_space_2_minus_Diacyl_minus_sn_minus_glycerol.sbmlCompartment="uVol";
  sn_minus_glycero_minus_3_minus_Phosphoethanolamine.sbmlRole="species";
  sn_minus_glycero_minus_3_minus_Phosphoethanolamine.sbmlCompartment="uVol";
  sn_minus_glycero_minus_3_minus_Phosphocholine.sbmlRole="species";
  sn_minus_glycero_minus_3_minus_Phosphocholine.sbmlCompartment="uVol";
  R06872.sbmlRole="rate";
  R06872.kf.sbmlRole="rate";
  R06872.kb.sbmlRole="rate";
  R02241.sbmlRole="rate";
  R02241.kf.sbmlRole="rate";
  R02241.kb.sbmlRole="rate";
  R00848.sbmlRole="rate";
  R00848.kf.sbmlRole="rate";
  R00848.kb.sbmlRole="rate";
  R00842.sbmlRole="rate";
  R00842.kf.sbmlRole="rate";
  R00842.kb.sbmlRole="rate";
  R01799.sbmlRole="rate";
  R01799.kf.sbmlRole="rate";
  R01799.kb.sbmlRole="rate";
  R02240.sbmlRole="rate";
  R02240.kf.sbmlRole="rate";
  R02240.kb.sbmlRole="rate";
  R01801.sbmlRole="rate";
  R01801.kf.sbmlRole="rate";
  R01801.kb.sbmlRole="rate";
  R01470.sbmlRole="rate";
  R01470.kf.sbmlRole="rate";
  R01470.kb.sbmlRole="rate";
  R01030.sbmlRole="rate";
  R01030.kf.sbmlRole="rate";
  R01030.kb.sbmlRole="rate";
}