// This model generated automatically from SBML
// WARNING: Renamed variable _alpha__minus_D_minus_Glucose_space_6_minus_phosphate to xxx_alpha__minus_D_minus_Glucose_space_6_minus_phosphate due to JSim namespace restrictions
// WARNING: Renamed variable _beta__minus_D_minus_Glucose_space_6_minus_phosphate to xxx_beta__minus_D_minus_Glucose_space_6_minus_phosphate due to JSim namespace restrictions
// WARNING: Renamed variable _beta__minus_D_minus_Fructose_space_6_minus_phosphate to xxx_beta__minus_D_minus_Fructose_space_6_minus_phosphate due to JSim namespace restrictions
// WARNING: Renamed variable _beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate to xxx_beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate due to JSim namespace restrictions
// WARNING: Renamed variable _space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal to xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal due to JSim namespace restrictions
// WARNING: Renamed variable _space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate to xxx_space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate due to JSim namespace restrictions
// WARNING: Renamed variable _space_5_minus_Phospho_minus__alpha__minus_D_minus_ribose_space_1_minus_diphosphate to xxx_space_5_minus_Phospho_minus__alpha__minus_D_minus_ribose_space_1_minus_diphosphate due to JSim namespace restrictions

// unit definitions
import nsrunit;
unit conversion off;

// SBML property definitions
property sbmlRole=string;
property sbmlName=string;
property sbmlCompartment=string;

// SBML reactions
// R01056: D_minus_Ribose_space_5_minus_phosphate => D_minus_Ribulose_space_5_minus_phosphate 
// R01070: _beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate => _space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal 
// R02739: _alpha__minus_D_minus_Glucose_space_6_minus_phosphate => _beta__minus_D_minus_Glucose_space_6_minus_phosphate 
// R02750: Deoxyribose => _space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate 
// R02740: _alpha__minus_D_minus_Glucose_space_6_minus_phosphate => _beta__minus_D_minus_Fructose_space_6_minus_phosphate 
// R01051: D_minus_Ribose => D_minus_Ribose_space_5_minus_phosphate 
// R01049: D_minus_Ribose_space_5_minus_phosphate => _space_5_minus_Phospho_minus__alpha__minus_D_minus_ribose_space_1_minus_diphosphate 
// R01066: _space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate => _space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal 

math main {
  realDomain time second;
  time.min=0;
  extern time.max;
  extern time.delta;

  // variable definitions
  real default = 1 L;
  real uVol = 1 L;
  real E5_space_3_space_1_space_9 = 0 M;
  real E2_space_7_space_1_space_15 = 0 M;
  real E4_space_1_space_2_space_13 = 0 M;
  real E4_space_1_space_2_space_4 = 0 M;
  real E5_space_3_space_1_space_6 = 0 M;
  real E2_space_7_space_6_space_1 = 0 M;
  real Deoxyribose(time) M;
  real xxx_alpha__minus_D_minus_Glucose_space_6_minus_phosphate(time) M;
  real xxx_beta__minus_D_minus_Glucose_space_6_minus_phosphate(time) M;
  real xxx_beta__minus_D_minus_Fructose_space_6_minus_phosphate(time) M;
  real xxx_beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate(time) M;
  real xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal(time) M;
  real xxx_space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate(time) M;
  real D_minus_Ribulose_space_5_minus_phosphate(time) M;
  real D_minus_Ribose_space_5_minus_phosphate(time) M;
  real D_minus_Ribose(time) M;
  real xxx_space_5_minus_Phospho_minus__alpha__minus_D_minus_ribose_space_1_minus_diphosphate(time) M;
  real R01056(time) katal;
  extern real R01056.kf;
  extern real R01056.kb;
  real R01070(time) katal;
  extern real R01070.kf;
  extern real R01070.kb;
  real R02739(time) katal;
  extern real R02739.kf;
  extern real R02739.kb;
  real R02750(time) katal;
  extern real R02750.kf;
  extern real R02750.kb;
  real R02740(time) katal;
  extern real R02740.kf;
  extern real R02740.kb;
  real R01051(time) katal;
  extern real R01051.kf;
  extern real R01051.kb;
  real R01049(time) katal;
  extern real R01049.kf;
  extern real R01049.kb;
  real R01066(time) katal;
  extern real R01066.kf;
  extern real R01066.kb;

  // equations
  when (time=time.min) Deoxyribose = 0;
  (Deoxyribose*uVol):time = -1*R02750;
  when (time=time.min) xxx_alpha__minus_D_minus_Glucose_space_6_minus_phosphate = 0;
  (xxx_alpha__minus_D_minus_Glucose_space_6_minus_phosphate*uVol):time = -1*R02739 + -1*R02740;
  when (time=time.min) xxx_beta__minus_D_minus_Glucose_space_6_minus_phosphate = 0;
  (xxx_beta__minus_D_minus_Glucose_space_6_minus_phosphate*uVol):time = R02739;
  when (time=time.min) xxx_beta__minus_D_minus_Fructose_space_6_minus_phosphate = 0;
  (xxx_beta__minus_D_minus_Fructose_space_6_minus_phosphate*uVol):time = R02740;
  when (time=time.min) xxx_beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate = 0;
  (xxx_beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate*uVol):time = -1*R01070;
  when (time=time.min) xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal = 0;
  (xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal*uVol):time = R01070 + R01066;
  when (time=time.min) xxx_space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate = 0;
  (xxx_space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate*uVol):time = R02750 + -1*R01066;
  when (time=time.min) D_minus_Ribulose_space_5_minus_phosphate = 0;
  (D_minus_Ribulose_space_5_minus_phosphate*uVol):time = R01056;
  when (time=time.min) D_minus_Ribose_space_5_minus_phosphate = 0;
  (D_minus_Ribose_space_5_minus_phosphate*uVol):time = -1*R01056 + R01051 + -1*R01049;
  when (time=time.min) D_minus_Ribose = 0;
  (D_minus_Ribose*uVol):time = -1*R01051;
  when (time=time.min) xxx_space_5_minus_Phospho_minus__alpha__minus_D_minus_ribose_space_1_minus_diphosphate = 0;
  (xxx_space_5_minus_Phospho_minus__alpha__minus_D_minus_ribose_space_1_minus_diphosphate*uVol):time = R01049;
  R01056 = R01056.kf*D_minus_Ribose_space_5_minus_phosphate - R01056.kb*D_minus_Ribulose_space_5_minus_phosphate;
  R01070 = R01070.kf*_beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate - R01070.kb*_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal;
  R02739 = R02739.kf*_alpha__minus_D_minus_Glucose_space_6_minus_phosphate - R02739.kb*_beta__minus_D_minus_Glucose_space_6_minus_phosphate;
  R02750 = R02750.kf*Deoxyribose - R02750.kb*_space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate;
  R02740 = R02740.kf*_alpha__minus_D_minus_Glucose_space_6_minus_phosphate - R02740.kb*_beta__minus_D_minus_Fructose_space_6_minus_phosphate;
  R01051 = R01051.kf*D_minus_Ribose - R01051.kb*D_minus_Ribose_space_5_minus_phosphate;
  R01049 = R01049.kf*D_minus_Ribose_space_5_minus_phosphate - R01049.kb*_space_5_minus_Phospho_minus__alpha__minus_D_minus_ribose_space_1_minus_diphosphate;
  R01066 = R01066.kf*_space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate - R01066.kb*_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal;

  // variable properties
  default.sbmlRole="compartment";
  uVol.sbmlRole="compartment";
  E5_space_3_space_1_space_9.sbmlRole="species";
  E5_space_3_space_1_space_9.sbmlCompartment="uVol";
  E2_space_7_space_1_space_15.sbmlRole="species";
  E2_space_7_space_1_space_15.sbmlCompartment="uVol";
  E4_space_1_space_2_space_13.sbmlRole="species";
  E4_space_1_space_2_space_13.sbmlCompartment="uVol";
  E4_space_1_space_2_space_4.sbmlRole="species";
  E4_space_1_space_2_space_4.sbmlCompartment="uVol";
  E5_space_3_space_1_space_6.sbmlRole="species";
  E5_space_3_space_1_space_6.sbmlCompartment="uVol";
  E2_space_7_space_6_space_1.sbmlRole="species";
  E2_space_7_space_6_space_1.sbmlCompartment="uVol";
  Deoxyribose.sbmlRole="species";
  Deoxyribose.sbmlCompartment="uVol";
  xxx_alpha__minus_D_minus_Glucose_space_6_minus_phosphate.sbmlRole="species";
  xxx_alpha__minus_D_minus_Glucose_space_6_minus_phosphate.sbmlName="_alpha__minus_D_minus_Glucose_space_6_minus_phosphate";
  xxx_alpha__minus_D_minus_Glucose_space_6_minus_phosphate.sbmlCompartment="uVol";
  xxx_beta__minus_D_minus_Glucose_space_6_minus_phosphate.sbmlRole="species";
  xxx_beta__minus_D_minus_Glucose_space_6_minus_phosphate.sbmlName="_beta__minus_D_minus_Glucose_space_6_minus_phosphate";
  xxx_beta__minus_D_minus_Glucose_space_6_minus_phosphate.sbmlCompartment="uVol";
  xxx_beta__minus_D_minus_Fructose_space_6_minus_phosphate.sbmlRole="species";
  xxx_beta__minus_D_minus_Fructose_space_6_minus_phosphate.sbmlName="_beta__minus_D_minus_Fructose_space_6_minus_phosphate";
  xxx_beta__minus_D_minus_Fructose_space_6_minus_phosphate.sbmlCompartment="uVol";
  xxx_beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate.sbmlRole="species";
  xxx_beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate.sbmlName="_beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate";
  xxx_beta__minus_D_minus_Fructose_space_1_space_6_minus_bisphosphate.sbmlCompartment="uVol";
  xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal.sbmlRole="species";
  xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal.sbmlName="_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal";
  xxx_space_2R_space__minus_2_minus_Hydroxy_minus_3_minus__space_phosphonooxy_space__minus_propanal.sbmlCompartment="uVol";
  xxx_space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate.sbmlRole="species";
  xxx_space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate.sbmlName="_space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate";
  xxx_space_2_minus_Deoxy_minus_D_minus_ribose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Ribulose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Ribulose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Ribose_space_5_minus_phosphate.sbmlRole="species";
  D_minus_Ribose_space_5_minus_phosphate.sbmlCompartment="uVol";
  D_minus_Ribose.sbmlRole="species";
  D_minus_Ribose.sbmlCompartment="uVol";
  xxx_space_5_minus_Phospho_minus__alpha__minus_D_minus_ribose_space_1_minus_diphosphate.sbmlRole="species";
  xxx_space_5_minus_Phospho_minus__alpha__minus_D_minus_ribose_space_1_minus_diphosphate.sbmlName="_space_5_minus_Phospho_minus__alpha__minus_D_minus_ribose_space_1_minus_diphosphate";
  xxx_space_5_minus_Phospho_minus__alpha__minus_D_minus_ribose_space_1_minus_diphosphate.sbmlCompartment="uVol";
  R01056.sbmlRole="rate";
  R01056.kf.sbmlRole="rate";
  R01056.kb.sbmlRole="rate";
  R01070.sbmlRole="rate";
  R01070.kf.sbmlRole="rate";
  R01070.kb.sbmlRole="rate";
  R02739.sbmlRole="rate";
  R02739.kf.sbmlRole="rate";
  R02739.kb.sbmlRole="rate";
  R02750.sbmlRole="rate";
  R02750.kf.sbmlRole="rate";
  R02750.kb.sbmlRole="rate";
  R02740.sbmlRole="rate";
  R02740.kf.sbmlRole="rate";
  R02740.kb.sbmlRole="rate";
  R01051.sbmlRole="rate";
  R01051.kf.sbmlRole="rate";
  R01051.kb.sbmlRole="rate";
  R01049.sbmlRole="rate";
  R01049.kf.sbmlRole="rate";
  R01049.kb.sbmlRole="rate";
  R01066.sbmlRole="rate";
  R01066.kf.sbmlRole="rate";
  R01066.kb.sbmlRole="rate";
}