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Kegg pathway models for JSim

Organism bci: Baumannia cicadellinicola

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bci00010 Glycolysis / Gluconeogenesis SBML MML
bci00020 Citrate cycle (TCA cycle) SBML MML
bci00030 Pentose phosphate pathway SBML MML
bci00051 Fructose and mannose metabolism SBML MML
bci00061 Fatty acid biosynthesis SBML MML
bci00100 (Undocumented) SBML MML
bci00230 Purine metabolism SBML MML
bci00240 Pyrimidine metabolism SBML MML
bci00251 (Undocumented) SBML MML
bci00252 (Undocumented) SBML MML
bci00260 Glycine, serine and threonine metabolism SBML MML
bci00271 (Undocumented) SBML MML
bci00272 (Undocumented) SBML MML
bci00280 Valine, leucine and isoleucine degradation SBML MML
bci00290 Valine, leucine and isoleucine biosynthesis SBML MML
bci00300 Lysine biosynthesis SBML MML
bci00330 Arginine and proline metabolism SBML MML
bci00340 Histidine metabolism SBML MML
bci00350 Tyrosine metabolism SBML MML
bci00360 Phenylalanine metabolism SBML MML
bci00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bci00401 Novobiocin biosynthesis SBML MML
bci00430 Taurine and hypotaurine metabolism SBML MML
bci00450 Selenoamino acid metabolism SBML MML
bci00471 D-Glutamine and D-glutamate metabolism SBML MML
bci00480 Glutathione metabolism SBML MML
bci00530 (Undocumented) SBML MML
bci00550 Peptidoglycan biosynthesis SBML MML
bci00561 Glycerolipid metabolism SBML MML
bci00562 Inositol phosphate metabolism SBML MML
bci00564 Glycerophospholipid metabolism SBML MML
bci00620 Pyruvate metabolism SBML MML
bci00630 Glyoxylate and dicarboxylate metabolism SBML MML
bci00640 Propanoate metabolism SBML MML
bci00670 One carbon pool by folate SBML MML
bci00680 Methane metabolism SBML MML
bci00710 (Undocumented) SBML MML
bci00720 (Undocumented) SBML MML
bci00730 Thiamine metabolism SBML MML
bci00740 Riboflavin metabolism SBML MML
bci00750 Vitamin B6 metabolism SBML MML
bci00760 Nicotinate and nicotinamide metabolism SBML MML
bci00770 Pantothenate and CoA biosynthesis SBML MML
bci00780 Biotin metabolism SBML MML
bci00785 Lipoic acid metabolism SBML MML
bci00790 Folate biosynthesis SBML MML
bci00860 Porphyrin and chlorophyll metabolism SBML MML
bci00900 Terpenoid backbone biosynthesis SBML MML
bci00910 Nitrogen metabolism SBML MML
bci00920 Sulfur metabolism SBML MML
bci00970 Aminoacyl-tRNA biosynthesis SBML MML
bci00983 (Undocumented) SBML MML

Model development and archiving support at provided by the following grants: NIH U01HL122199 Analyzing the Cardiac Power Grid, 09/15/2015 - 05/31/2020, NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.