Kegg pathway models for JSim
Organism bxe: Burkholderia xenovorans
to run JSim applets. See
JSim Kegg models page
for comlete list of Kegg models.
| Kegg link | Pathway | SBML | MML | Download |
Applet |
|---|
| bxe00010 |
Glycolysis / Gluconeogenesis |
SBML |
MML |
|
|
| bxe00020 |
Citrate cycle (TCA cycle) |
SBML |
MML |
|
|
| bxe00030 |
Pentose phosphate pathway |
SBML |
MML |
|
|
| bxe00031 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00040 |
Pentose and glucuronate interconversions |
SBML |
MML |
|
|
| bxe00051 |
Fructose and mannose metabolism |
SBML |
MML |
|
|
| bxe00052 |
Galactose metabolism |
SBML |
MML |
|
|
| bxe00053 |
Ascorbate and aldarate metabolism |
SBML |
MML |
|
|
| bxe00061 |
Fatty acid biosynthesis |
SBML |
MML |
|
|
| bxe00062 |
Fatty acid elongation in mitochondria |
SBML |
MML |
|
|
| bxe00071 |
Fatty acid metabolism |
SBML |
MML |
|
|
| bxe00072 |
Synthesis and degradation of ketone bodies |
SBML |
MML |
|
|
| bxe00100 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00120 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00130 |
Ubiquinone and other terpenoid-quinone biosynthesis |
SBML |
MML |
|
|
| bxe00150 |
Androgen and estrogen metabolism |
SBML |
MML |
|
|
| bxe00220 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00230 |
Purine metabolism |
SBML |
MML |
|
|
| bxe00240 |
Pyrimidine metabolism |
SBML |
MML |
|
|
| bxe00251 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00252 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00260 |
Glycine, serine and threonine metabolism |
SBML |
MML |
|
|
| bxe00271 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00272 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00280 |
Valine, leucine and isoleucine degradation |
SBML |
MML |
|
|
| bxe00281 |
Geraniol degradation |
SBML |
MML |
|
|
| bxe00290 |
Valine, leucine and isoleucine biosynthesis |
SBML |
MML |
|
|
| bxe00300 |
Lysine biosynthesis |
SBML |
MML |
|
|
| bxe00310 |
Lysine degradation |
SBML |
MML |
|
|
| bxe00330 |
Arginine and proline metabolism |
SBML |
MML |
|
|
| bxe00340 |
Histidine metabolism |
SBML |
MML |
|
|
| bxe00350 |
Tyrosine metabolism |
SBML |
MML |
|
|
| bxe00351 |
1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation |
SBML |
MML |
|
|
| bxe00360 |
Phenylalanine metabolism |
SBML |
MML |
|
|
| bxe00361 |
gamma-Hexachlorocyclohexane degradation |
SBML |
MML |
|
|
| bxe00362 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00363 |
Bisphenol A degradation |
SBML |
MML |
|
|
| bxe00364 |
Fluorobenzoate degradation |
SBML |
MML |
|
|
| bxe00380 |
Tryptophan metabolism |
SBML |
MML |
|
|
| bxe00400 |
Phenylalanine, tyrosine and tryptophan biosynthesis |
SBML |
MML |
|
|
| bxe00401 |
Novobiocin biosynthesis |
SBML |
MML |
|
|
| bxe00410 |
beta-Alanine metabolism |
SBML |
MML |
|
|
| bxe00430 |
Taurine and hypotaurine metabolism |
SBML |
MML |
|
|
| bxe00440 |
Phosphonate and phosphinate metabolism |
SBML |
MML |
|
|
| bxe00450 |
Selenoamino acid metabolism |
SBML |
MML |
|
|
| bxe00460 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00471 |
D-Glutamine and D-glutamate metabolism |
SBML |
MML |
|
|
| bxe00472 |
D-Arginine and D-ornithine metabolism |
SBML |
MML |
|
|
| bxe00473 |
D-Alanine metabolism |
SBML |
MML |
|
|
| bxe00480 |
Glutathione metabolism |
SBML |
MML |
|
|
| bxe00500 |
Starch and sucrose metabolism |
SBML |
MML |
|
|
| bxe00520 |
Amino sugar and nucleotide sugar metabolism |
SBML |
MML |
|
|
| bxe00521 |
Streptomycin biosynthesis |
SBML |
MML |
|
|
| bxe00523 |
Polyketide sugar unit biosynthesis |
SBML |
MML |
|
|
| bxe00530 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00540 |
Lipopolysaccharide biosynthesis |
SBML |
MML |
|
|
| bxe00550 |
Peptidoglycan biosynthesis |
SBML |
MML |
|
|
| bxe00561 |
Glycerolipid metabolism |
SBML |
MML |
|
|
| bxe00562 |
Inositol phosphate metabolism |
SBML |
MML |
|
|
| bxe00564 |
Glycerophospholipid metabolism |
SBML |
MML |
|
|
| bxe00565 |
Ether lipid metabolism |
SBML |
MML |
|
|
| bxe00590 |
Arachidonic acid metabolism |
SBML |
MML |
|
|
| bxe00592 |
alpha-Linolenic acid metabolism |
SBML |
MML |
|
|
| bxe00600 |
Sphingolipid metabolism |
SBML |
MML |
|
|
| bxe00620 |
Pyruvate metabolism |
SBML |
MML |
|
|
| bxe00621 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00622 |
Toluene and xylene degradation |
SBML |
MML |
|
|
| bxe00623 |
2,4-Dichlorobenzoate degradation |
SBML |
MML |
|
|
| bxe00624 |
1- and 2-Methylnaphthalene degradation |
SBML |
MML |
|
|
| bxe00625 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00626 |
Naphthalene and anthracene degradation |
SBML |
MML |
|
|
| bxe00627 |
1,4-Dichlorobenzene degradation |
SBML |
MML |
|
|
| bxe00628 |
Fluorene degradation |
SBML |
MML |
|
|
| bxe00629 |
Carbazole degradation |
SBML |
MML |
|
|
| bxe00630 |
Glyoxylate and dicarboxylate metabolism |
SBML |
MML |
|
|
| bxe00631 |
1,2-Dichloroethane degradation |
SBML |
MML |
|
|
| bxe00632 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00633 |
Trinitrotoluene degradation |
SBML |
MML |
|
|
| bxe00640 |
Propanoate metabolism |
SBML |
MML |
|
|
| bxe00641 |
3-Chloroacrylic acid degradation |
SBML |
MML |
|
|
| bxe00642 |
Ethylbenzene degradation |
SBML |
MML |
|
|
| bxe00643 |
Styrene degradation |
SBML |
MML |
|
|
| bxe00650 |
Butanoate metabolism |
SBML |
MML |
|
|
| bxe00660 |
C5-Branched dibasic acid metabolism |
SBML |
MML |
|
|
| bxe00670 |
One carbon pool by folate |
SBML |
MML |
|
|
| bxe00680 |
Methane metabolism |
SBML |
MML |
|
|
| bxe00710 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00720 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00730 |
Thiamine metabolism |
SBML |
MML |
|
|
| bxe00740 |
Riboflavin metabolism |
SBML |
MML |
|
|
| bxe00750 |
Vitamin B6 metabolism |
SBML |
MML |
|
|
| bxe00760 |
Nicotinate and nicotinamide metabolism |
SBML |
MML |
|
|
| bxe00770 |
Pantothenate and CoA biosynthesis |
SBML |
MML |
|
|
| bxe00780 |
Biotin metabolism |
SBML |
MML |
|
|
| bxe00785 |
Lipoic acid metabolism |
SBML |
MML |
|
|
| bxe00790 |
Folate biosynthesis |
SBML |
MML |
|
|
| bxe00791 |
Atrazine degradation |
SBML |
MML |
|
|
| bxe00860 |
Porphyrin and chlorophyll metabolism |
SBML |
MML |
|
|
| bxe00900 |
Terpenoid backbone biosynthesis |
SBML |
MML |
|
|
| bxe00903 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00910 |
Nitrogen metabolism |
SBML |
MML |
|
|
| bxe00920 |
Sulfur metabolism |
SBML |
MML |
|
|
| bxe00930 |
Caprolactam degradation |
SBML |
MML |
|
|
| bxe00940 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00941 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00950 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00960 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00970 |
Aminoacyl-tRNA biosynthesis |
SBML |
MML |
|
|
| bxe00980 |
Metabolism of xenobiotics by cytochrome P450 |
SBML |
MML |
|
|
| bxe00982 |
(Undocumented) |
SBML |
MML |
|
|
| bxe00983 |
(Undocumented) |
SBML |
MML |
|
|
Model development and archiving support at
physiome.org provided by the following grants: NIH U01HL122199 Analyzing the Cardiac Power Grid, 09/15/2015 - 05/31/2020, NIH/NIBIB BE08407 Software Integration,
JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ,
4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation,
8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer
Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior
support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass
Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973
JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.
