Facilitating Transporter for 2 competing solutes including binding steps. Shows countertransport facilitation/inhibition. Substrate A is converted to B in region 2.
Model number: 0011
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The input function Ain(t) = 1 mM, a constant. Solute A is transported
from V1 to V2 by a transporter that can bind to either A or B. The
transporter can flip from side to side in the unbound form T, or
in the bound forms, TA and TB. In V2, A is converted to B by an irreversible Michaelis-Menten like process.
When the rate of flipping of the unbound transporter, T1 to T2 and vice versa, is less than the rate for the bound transporter, TA1, TB1, TA2, and TB2, then the presence of B2 in V2 facilitates the transfer of A from V1 to V2 because it augments the return into unbound T1 on side 1. This can be seen by the increase in transmembrane flux of A after 35-45 seconds when B2 has built up enough TB2 and TB1, which then delivers B to V1 giving more unbound T1 so A1 diminishes.
Transp2sol.Comp2F is a six state transporter model for 2 solutes in competition Two solute species compete for the transporter site on either side of a membrane between two mixing chambers. In compartment 2, A is reacted to form B in an enzymatic reaction approximated by a Michaelis Menten expression, and without any accounting for binding of substrate or product to the enzyme. When the rates of conformational state change for transmembrane flipping of TA and TB are high compared to that for uncomplexed transporter T, then the model behaves much like an obligatory countertransporter, exchanging B for A across the membrane; With the initial substrate concentrations high compared to the transporter binding affinities, KdA or KdB, most of the transporter is bound and the system behaves as an obligatory countertransporter, though the gradient eventually dissipates. MODEL VERIFICATION: Total Mass is conserved: Substrate in solution is totaled as SubstrateV, and substrate bound to transporter as SubstrateM, for membrane bound.
Ordinary Differential Equations
Ordinary Differential Equations
Transporter Mass Conservation
Substrate Mass Conservation
WARNING: Thermodynamic constraint are not included in the model. For a passive transporter, the transport rate constants should satisfy the following constraints:
The equations for this model may also be viewed by running the JSim model applet and clicking on the Source tab at the bottom left of JSim's Run Time graphical user interface. The equations are written in JSim's Mathematical Modeling Language (MML). See the Introduction to MML and the MML Reference Manual. Additional documentation for MML can be found by using the search option at the Physiome home page.
Klingenberg M. Membrane protein oligomeric structure and transport function. Nature 290: 449-454, 1981. Stein WD. The Movement of Molecules across Cell Membranes. New York: Academic Press, 1967. Stein WD. Transport and Diffusion across Cell Membranes. Orlando, Florida: Academic Press Inc., 1986. Wilbrandt W and Rosenberg T. The concept of carrier transport and its corollaries in pharmacology. Pharmacol Rev 13: 109-183, 1961. Schwartz LM, Bukowski TR, Ploger JD, and Bassingthwaighte JB. Endothelial adenosin transporter characterization in perfused guinea pig hearts. Am J Physiol Heart Circ Physiol 279: H1502-H1511, 2000. Foster DM and Jacquez JA. An analysis of the adequacy of the asymmetric carrier model for sugar transport. Biochim Biophys Acta 436: 210-221, 1976.
Master Two Compartment Transporter Model (includes all cases):
- TransComp2: 2 compartments, flow/no flow, 1 or 2 solutes, 2 types of reactions, 6 types of transporters
- Comp2Exchange: 2 compartments, no flow, 1 solute, 2 sided passive transporter
- Comp2FlowExchange: 2 compartments, with flow, 1 solute, 2 sided passive transporter
- Comp2ExchangeReaction: 2 compartments, no flow, 2 solutes, 2 sided passive transporter
- Comp2FlowExchangeReaction: 2 compartments, with flow, 2 solutes, 2 sided passive transporter
- Comp2FlowMMExchangeReaction: 2 compartments, with flow, 2 solutes, 4 single 1 sided Michaelis-Menten transporters
- BTEX20: 2 distributed regions (PDE), with flow, 1 solute, 2 sided passive transporter
- CTEX20: 2 distributed regions (serially connected ODEs), with flow, 1 solute, 2 sided passive transporter
- CTEX20b: 2 distributed regions (serially connected ODEs), with flow, 1 solute, 2 sided passive and 1 sided Michaelis-Menten transporter
- No Flow
- TranspMM1sidedComp2: 2 compartments, no flow, 1 solute, 1 sided MM transporter
- TranspMM.2sided.Comp2: 2 compartments, no flow, 1 solute, both 1 sided and 2 sided MM transporters
- With Flow
- 1 solute
- Transp1sol.Comp2: 2 compartments, no flow, 1 solute, T1-T2 transporter
- Transp1sol.Comp2F: 2 compartments, with flow, 1 solute, T1-T2 transporter
- Two solutes
- Transp2sol.Comp2: 2 compartments, no flow, 2 solutes, competitive T1-T2 transporter
- Transp2sol.Comp2: 2 compartments, with flow, 2 solutes, competitive T1-T2 transporter
- Transp2sol.Distrib2F: 2 regions with flow, 2 solutes, both T1-T2 and passive transporters, Michaelis-Menten enzymatic reaction, Counter-Transport Faciliation
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[This page was last modified 02Nov16, 3:08 pm.]
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