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Kegg pathway models for JSim

Organism atu: Agrobacterium tumefaciens C58

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Java WS
atu00010 Glycolysis / Gluconeogenesis SBML MML
atu00020 Citrate cycle (TCA cycle) SBML MML
atu00030 Pentose phosphate pathway SBML MML
atu00031 (Undocumented) SBML MML
atu00040 Pentose and glucuronate interconversions SBML MML
atu00051 Fructose and mannose metabolism SBML MML
atu00052 Galactose metabolism SBML MML
atu00053 Ascorbate and aldarate metabolism SBML MML
atu00061 Fatty acid biosynthesis SBML MML
atu00062 Fatty acid elongation in mitochondria SBML MML
atu00071 Fatty acid metabolism SBML MML
atu00072 Synthesis and degradation of ketone bodies SBML MML
atu00100 (Undocumented) SBML MML
atu00120 (Undocumented) SBML MML
atu00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
atu00150 Androgen and estrogen metabolism SBML MML
atu00220 (Undocumented) SBML MML
atu00230 Purine metabolism SBML MML
atu00240 Pyrimidine metabolism SBML MML
atu00251 (Undocumented) SBML MML
atu00252 (Undocumented) SBML MML
atu00260 Glycine, serine and threonine metabolism SBML MML
atu00271 (Undocumented) SBML MML
atu00272 (Undocumented) SBML MML
atu00280 Valine, leucine and isoleucine degradation SBML MML
atu00281 Geraniol degradation SBML MML
atu00290 Valine, leucine and isoleucine biosynthesis SBML MML
atu00300 Lysine biosynthesis SBML MML
atu00310 Lysine degradation SBML MML
atu00330 Arginine and proline metabolism SBML MML
atu00340 Histidine metabolism SBML MML
atu00350 Tyrosine metabolism SBML MML
atu00360 Phenylalanine metabolism SBML MML
atu00361 gamma-Hexachlorocyclohexane degradation SBML MML
atu00362 (Undocumented) SBML MML
atu00363 Bisphenol A degradation SBML MML
atu00364 Fluorobenzoate degradation SBML MML
atu00380 Tryptophan metabolism SBML MML
atu00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
atu00401 Novobiocin biosynthesis SBML MML
atu00410 beta-Alanine metabolism SBML MML
atu00440 Phosphonate and phosphinate metabolism SBML MML
atu00450 Selenoamino acid metabolism SBML MML
atu00460 (Undocumented) SBML MML
atu00471 D-Glutamine and D-glutamate metabolism SBML MML
atu00472 D-Arginine and D-ornithine metabolism SBML MML
atu00473 D-Alanine metabolism SBML MML
atu00480 Glutathione metabolism SBML MML
atu00500 Starch and sucrose metabolism SBML MML
atu00510 (Undocumented) SBML MML
atu00520 Amino sugar and nucleotide sugar metabolism SBML MML
atu00521 Streptomycin biosynthesis SBML MML
atu00523 Polyketide sugar unit biosynthesis SBML MML
atu00530 (Undocumented) SBML MML
atu00540 Lipopolysaccharide biosynthesis SBML MML
atu00550 Peptidoglycan biosynthesis SBML MML
atu00561 Glycerolipid metabolism SBML MML
atu00562 Inositol phosphate metabolism SBML MML
atu00564 Glycerophospholipid metabolism SBML MML
atu00592 alpha-Linolenic acid metabolism SBML MML
atu00600 Sphingolipid metabolism SBML MML
atu00620 Pyruvate metabolism SBML MML
atu00622 Toluene and xylene degradation SBML MML
atu00623 2,4-Dichlorobenzoate degradation SBML MML
atu00624 1- and 2-Methylnaphthalene degradation SBML MML
atu00626 Naphthalene and anthracene degradation SBML MML
atu00627 1,4-Dichlorobenzene degradation SBML MML
atu00628 Fluorene degradation SBML MML
atu00630 Glyoxylate and dicarboxylate metabolism SBML MML
atu00631 1,2-Dichloroethane degradation SBML MML
atu00632 (Undocumented) SBML MML
atu00633 Trinitrotoluene degradation SBML MML
atu00640 Propanoate metabolism SBML MML
atu00641 3-Chloroacrylic acid degradation SBML MML
atu00642 Ethylbenzene degradation SBML MML
atu00650 Butanoate metabolism SBML MML
atu00660 C5-Branched dibasic acid metabolism SBML MML
atu00670 One carbon pool by folate SBML MML
atu00680 Methane metabolism SBML MML
atu00710 (Undocumented) SBML MML
atu00720 (Undocumented) SBML MML
atu00730 Thiamine metabolism SBML MML
atu00740 Riboflavin metabolism SBML MML
atu00750 Vitamin B6 metabolism SBML MML
atu00760 Nicotinate and nicotinamide metabolism SBML MML
atu00770 Pantothenate and CoA biosynthesis SBML MML
atu00780 Biotin metabolism SBML MML
atu00785 Lipoic acid metabolism SBML MML
atu00790 Folate biosynthesis SBML MML
atu00860 Porphyrin and chlorophyll metabolism SBML MML
atu00900 Terpenoid backbone biosynthesis SBML MML
atu00903 (Undocumented) SBML MML
atu00910 Nitrogen metabolism SBML MML
atu00920 Sulfur metabolism SBML MML
atu00930 Caprolactam degradation SBML MML
atu00940 (Undocumented) SBML MML
atu00950 (Undocumented) SBML MML
atu00960 (Undocumented) SBML MML
atu00970 Aminoacyl-tRNA biosynthesis SBML MML
atu00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
atu00982 (Undocumented) SBML MML
atu00983 (Undocumented) SBML MML

Model development and archiving support at provided by the following grants: NIH U01HL122199 Analyzing the Cardiac Power Grid, 09/15/2015 - 05/31/2020, NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.