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Kegg pathway models for JSim

Organism cyb: Cyanobacteria Yellowstone B-Prime

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Java WS
cyb00010 Glycolysis / Gluconeogenesis SBML MML
cyb00020 Citrate cycle (TCA cycle) SBML MML
cyb00030 Pentose phosphate pathway SBML MML
cyb00040 Pentose and glucuronate interconversions SBML MML
cyb00051 Fructose and mannose metabolism SBML MML
cyb00052 Galactose metabolism SBML MML
cyb00061 Fatty acid biosynthesis SBML MML
cyb00071 Fatty acid metabolism SBML MML
cyb00100 (Undocumented) SBML MML
cyb00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cyb00220 (Undocumented) SBML MML
cyb00230 Purine metabolism SBML MML
cyb00240 Pyrimidine metabolism SBML MML
cyb00251 (Undocumented) SBML MML
cyb00252 (Undocumented) SBML MML
cyb00260 Glycine, serine and threonine metabolism SBML MML
cyb00271 (Undocumented) SBML MML
cyb00272 (Undocumented) SBML MML
cyb00280 Valine, leucine and isoleucine degradation SBML MML
cyb00281 Geraniol degradation SBML MML
cyb00290 Valine, leucine and isoleucine biosynthesis SBML MML
cyb00300 Lysine biosynthesis SBML MML
cyb00311 Penicillin and cephalosporin biosynthesis SBML MML
cyb00330 Arginine and proline metabolism SBML MML
cyb00331 Clavulanic acid biosynthesis SBML MML
cyb00340 Histidine metabolism SBML MML
cyb00350 Tyrosine metabolism SBML MML
cyb00360 Phenylalanine metabolism SBML MML
cyb00380 Tryptophan metabolism SBML MML
cyb00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cyb00401 Novobiocin biosynthesis SBML MML
cyb00410 beta-Alanine metabolism SBML MML
cyb00430 Taurine and hypotaurine metabolism SBML MML
cyb00450 Selenoamino acid metabolism SBML MML
cyb00460 (Undocumented) SBML MML
cyb00471 D-Glutamine and D-glutamate metabolism SBML MML
cyb00473 D-Alanine metabolism SBML MML
cyb00480 Glutathione metabolism SBML MML
cyb00500 Starch and sucrose metabolism SBML MML
cyb00520 Amino sugar and nucleotide sugar metabolism SBML MML
cyb00521 Streptomycin biosynthesis SBML MML
cyb00530 (Undocumented) SBML MML
cyb00540 Lipopolysaccharide biosynthesis SBML MML
cyb00550 Peptidoglycan biosynthesis SBML MML
cyb00561 Glycerolipid metabolism SBML MML
cyb00562 Inositol phosphate metabolism SBML MML
cyb00564 Glycerophospholipid metabolism SBML MML
cyb00590 Arachidonic acid metabolism SBML MML
cyb00620 Pyruvate metabolism SBML MML
cyb00624 1- and 2-Methylnaphthalene degradation SBML MML
cyb00625 (Undocumented) SBML MML
cyb00626 Naphthalene and anthracene degradation SBML MML
cyb00630 Glyoxylate and dicarboxylate metabolism SBML MML
cyb00632 (Undocumented) SBML MML
cyb00640 Propanoate metabolism SBML MML
cyb00641 3-Chloroacrylic acid degradation SBML MML
cyb00643 Styrene degradation SBML MML
cyb00650 Butanoate metabolism SBML MML
cyb00670 One carbon pool by folate SBML MML
cyb00710 (Undocumented) SBML MML
cyb00720 (Undocumented) SBML MML
cyb00730 Thiamine metabolism SBML MML
cyb00740 Riboflavin metabolism SBML MML
cyb00750 Vitamin B6 metabolism SBML MML
cyb00760 Nicotinate and nicotinamide metabolism SBML MML
cyb00770 Pantothenate and CoA biosynthesis SBML MML
cyb00780 Biotin metabolism SBML MML
cyb00785 Lipoic acid metabolism SBML MML
cyb00790 Folate biosynthesis SBML MML
cyb00860 Porphyrin and chlorophyll metabolism SBML MML
cyb00900 Terpenoid backbone biosynthesis SBML MML
cyb00906 Carotenoid biosynthesis SBML MML
cyb00910 Nitrogen metabolism SBML MML
cyb00920 Sulfur metabolism SBML MML
cyb00960 (Undocumented) SBML MML
cyb00970 Aminoacyl-tRNA biosynthesis SBML MML
cyb00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
cyb00982 (Undocumented) SBML MML
cyb00983 (Undocumented) SBML MML

Model development and archiving support at provided by the following grants: NIH U01HL122199 Analyzing the Cardiac Power Grid, 09/15/2015 - 05/31/2020, NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.