This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Kegg pathway models for JSim

Organism msm: Mycobacterium smegmatis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Java WS
msm00010 Glycolysis / Gluconeogenesis SBML MML
msm00020 Citrate cycle (TCA cycle) SBML MML
msm00030 Pentose phosphate pathway SBML MML
msm00031 (Undocumented) SBML MML
msm00040 Pentose and glucuronate interconversions SBML MML
msm00051 Fructose and mannose metabolism SBML MML
msm00052 Galactose metabolism SBML MML
msm00053 Ascorbate and aldarate metabolism SBML MML
msm00061 Fatty acid biosynthesis SBML MML
msm00062 Fatty acid elongation in mitochondria SBML MML
msm00071 Fatty acid metabolism SBML MML
msm00072 Synthesis and degradation of ketone bodies SBML MML
msm00100 (Undocumented) SBML MML
msm00120 (Undocumented) SBML MML
msm00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
msm00140 (Undocumented) SBML MML
msm00150 Androgen and estrogen metabolism SBML MML
msm00220 (Undocumented) SBML MML
msm00230 Purine metabolism SBML MML
msm00232 Caffeine metabolism SBML MML
msm00240 Pyrimidine metabolism SBML MML
msm00251 (Undocumented) SBML MML
msm00252 (Undocumented) SBML MML
msm00260 Glycine, serine and threonine metabolism SBML MML
msm00271 (Undocumented) SBML MML
msm00272 (Undocumented) SBML MML
msm00280 Valine, leucine and isoleucine degradation SBML MML
msm00281 Geraniol degradation SBML MML
msm00290 Valine, leucine and isoleucine biosynthesis SBML MML
msm00300 Lysine biosynthesis SBML MML
msm00310 Lysine degradation SBML MML
msm00311 Penicillin and cephalosporin biosynthesis SBML MML
msm00330 Arginine and proline metabolism SBML MML
msm00340 Histidine metabolism SBML MML
msm00350 Tyrosine metabolism SBML MML
msm00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
msm00360 Phenylalanine metabolism SBML MML
msm00361 gamma-Hexachlorocyclohexane degradation SBML MML
msm00362 (Undocumented) SBML MML
msm00363 Bisphenol A degradation SBML MML
msm00364 Fluorobenzoate degradation SBML MML
msm00380 Tryptophan metabolism SBML MML
msm00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
msm00401 Novobiocin biosynthesis SBML MML
msm00410 beta-Alanine metabolism SBML MML
msm00430 Taurine and hypotaurine metabolism SBML MML
msm00440 Phosphonate and phosphinate metabolism SBML MML
msm00450 Selenoamino acid metabolism SBML MML
msm00460 (Undocumented) SBML MML
msm00471 D-Glutamine and D-glutamate metabolism SBML MML
msm00473 D-Alanine metabolism SBML MML
msm00480 Glutathione metabolism SBML MML
msm00500 Starch and sucrose metabolism SBML MML
msm00510 (Undocumented) SBML MML
msm00520 Amino sugar and nucleotide sugar metabolism SBML MML
msm00521 Streptomycin biosynthesis SBML MML
msm00523 Polyketide sugar unit biosynthesis SBML MML
msm00530 (Undocumented) SBML MML
msm00540 Lipopolysaccharide biosynthesis SBML MML
msm00550 Peptidoglycan biosynthesis SBML MML
msm00561 Glycerolipid metabolism SBML MML
msm00562 Inositol phosphate metabolism SBML MML
msm00564 Glycerophospholipid metabolism SBML MML
msm00590 Arachidonic acid metabolism SBML MML
msm00591 Linoleic acid metabolism SBML MML
msm00592 alpha-Linolenic acid metabolism SBML MML
msm00600 Sphingolipid metabolism SBML MML
msm00620 Pyruvate metabolism SBML MML
msm00621 (Undocumented) SBML MML
msm00622 Toluene and xylene degradation SBML MML
msm00623 2,4-Dichlorobenzoate degradation SBML MML
msm00624 1- and 2-Methylnaphthalene degradation SBML MML
msm00625 (Undocumented) SBML MML
msm00626 Naphthalene and anthracene degradation SBML MML
msm00627 1,4-Dichlorobenzene degradation SBML MML
msm00628 Fluorene degradation SBML MML
msm00629 Carbazole degradation SBML MML
msm00630 Glyoxylate and dicarboxylate metabolism SBML MML
msm00631 1,2-Dichloroethane degradation SBML MML
msm00632 (Undocumented) SBML MML
msm00640 Propanoate metabolism SBML MML
msm00641 3-Chloroacrylic acid degradation SBML MML
msm00642 Ethylbenzene degradation SBML MML
msm00643 Styrene degradation SBML MML
msm00650 Butanoate metabolism SBML MML
msm00660 C5-Branched dibasic acid metabolism SBML MML
msm00670 One carbon pool by folate SBML MML
msm00680 Methane metabolism SBML MML
msm00710 (Undocumented) SBML MML
msm00720 (Undocumented) SBML MML
msm00730 Thiamine metabolism SBML MML
msm00740 Riboflavin metabolism SBML MML
msm00750 Vitamin B6 metabolism SBML MML
msm00760 Nicotinate and nicotinamide metabolism SBML MML
msm00770 Pantothenate and CoA biosynthesis SBML MML
msm00780 Biotin metabolism SBML MML
msm00785 Lipoic acid metabolism SBML MML
msm00790 Folate biosynthesis SBML MML
msm00791 Atrazine degradation SBML MML
msm00860 Porphyrin and chlorophyll metabolism SBML MML
msm00900 Terpenoid backbone biosynthesis SBML MML
msm00903 (Undocumented) SBML MML
msm00906 Carotenoid biosynthesis SBML MML
msm00910 Nitrogen metabolism SBML MML
msm00920 Sulfur metabolism SBML MML
msm00930 Caprolactam degradation SBML MML
msm00940 (Undocumented) SBML MML
msm00941 (Undocumented) SBML MML
msm00950 (Undocumented) SBML MML
msm00960 (Undocumented) SBML MML
msm00970 Aminoacyl-tRNA biosynthesis SBML MML
msm00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
msm00982 (Undocumented) SBML MML
msm00983 (Undocumented) SBML MML

Model development and archiving support at provided by the following grants: NIH U01HL122199 Analyzing the Cardiac Power Grid, 09/15/2015 - 05/31/2020, NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.