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Kegg pathway models for JSim

Organism pne: Polynucleobacter necessarius

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Java WS
pne00010 Glycolysis / Gluconeogenesis SBML MML
pne00020 Citrate cycle (TCA cycle) SBML MML
pne00030 Pentose phosphate pathway SBML MML
pne00040 Pentose and glucuronate interconversions SBML MML
pne00051 Fructose and mannose metabolism SBML MML
pne00052 Galactose metabolism SBML MML
pne00053 Ascorbate and aldarate metabolism SBML MML
pne00061 Fatty acid biosynthesis SBML MML
pne00062 Fatty acid elongation in mitochondria SBML MML
pne00071 Fatty acid metabolism SBML MML
pne00072 Synthesis and degradation of ketone bodies SBML MML
pne00100 (Undocumented) SBML MML
pne00120 (Undocumented) SBML MML
pne00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pne00150 Androgen and estrogen metabolism SBML MML
pne00220 (Undocumented) SBML MML
pne00230 Purine metabolism SBML MML
pne00240 Pyrimidine metabolism SBML MML
pne00251 (Undocumented) SBML MML
pne00252 (Undocumented) SBML MML
pne00260 Glycine, serine and threonine metabolism SBML MML
pne00271 (Undocumented) SBML MML
pne00272 (Undocumented) SBML MML
pne00280 Valine, leucine and isoleucine degradation SBML MML
pne00281 Geraniol degradation SBML MML
pne00290 Valine, leucine and isoleucine biosynthesis SBML MML
pne00300 Lysine biosynthesis SBML MML
pne00310 Lysine degradation SBML MML
pne00330 Arginine and proline metabolism SBML MML
pne00340 Histidine metabolism SBML MML
pne00350 Tyrosine metabolism SBML MML
pne00360 Phenylalanine metabolism SBML MML
pne00361 gamma-Hexachlorocyclohexane degradation SBML MML
pne00362 (Undocumented) SBML MML
pne00363 Bisphenol A degradation SBML MML
pne00380 Tryptophan metabolism SBML MML
pne00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pne00401 Novobiocin biosynthesis SBML MML
pne00410 beta-Alanine metabolism SBML MML
pne00450 Selenoamino acid metabolism SBML MML
pne00460 (Undocumented) SBML MML
pne00471 D-Glutamine and D-glutamate metabolism SBML MML
pne00473 D-Alanine metabolism SBML MML
pne00480 Glutathione metabolism SBML MML
pne00500 Starch and sucrose metabolism SBML MML
pne00520 Amino sugar and nucleotide sugar metabolism SBML MML
pne00521 Streptomycin biosynthesis SBML MML
pne00523 Polyketide sugar unit biosynthesis SBML MML
pne00530 (Undocumented) SBML MML
pne00540 Lipopolysaccharide biosynthesis SBML MML
pne00550 Peptidoglycan biosynthesis SBML MML
pne00562 Inositol phosphate metabolism SBML MML
pne00564 Glycerophospholipid metabolism SBML MML
pne00590 Arachidonic acid metabolism SBML MML
pne00620 Pyruvate metabolism SBML MML
pne00622 Toluene and xylene degradation SBML MML
pne00624 1- and 2-Methylnaphthalene degradation SBML MML
pne00626 Naphthalene and anthracene degradation SBML MML
pne00627 1,4-Dichlorobenzene degradation SBML MML
pne00630 Glyoxylate and dicarboxylate metabolism SBML MML
pne00632 (Undocumented) SBML MML
pne00640 Propanoate metabolism SBML MML
pne00650 Butanoate metabolism SBML MML
pne00660 C5-Branched dibasic acid metabolism SBML MML
pne00670 One carbon pool by folate SBML MML
pne00680 Methane metabolism SBML MML
pne00710 (Undocumented) SBML MML
pne00720 (Undocumented) SBML MML
pne00730 Thiamine metabolism SBML MML
pne00740 Riboflavin metabolism SBML MML
pne00750 Vitamin B6 metabolism SBML MML
pne00760 Nicotinate and nicotinamide metabolism SBML MML
pne00770 Pantothenate and CoA biosynthesis SBML MML
pne00780 Biotin metabolism SBML MML
pne00790 Folate biosynthesis SBML MML
pne00860 Porphyrin and chlorophyll metabolism SBML MML
pne00900 Terpenoid backbone biosynthesis SBML MML
pne00903 (Undocumented) SBML MML
pne00910 Nitrogen metabolism SBML MML
pne00920 Sulfur metabolism SBML MML
pne00930 Caprolactam degradation SBML MML
pne00950 (Undocumented) SBML MML
pne00970 Aminoacyl-tRNA biosynthesis SBML MML
pne00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pne00983 (Undocumented) SBML MML

Model development and archiving support at provided by the following grants: NIH U01HL122199 Analyzing the Cardiac Power Grid, 09/15/2015 - 05/31/2020, NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.