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Kegg pathway models for JSim

Organism rde: Roseobacter denitrificans

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Java WS
rde00010 Glycolysis / Gluconeogenesis SBML MML
rde00020 Citrate cycle (TCA cycle) SBML MML
rde00030 Pentose phosphate pathway SBML MML
rde00031 (Undocumented) SBML MML
rde00040 Pentose and glucuronate interconversions SBML MML
rde00051 Fructose and mannose metabolism SBML MML
rde00052 Galactose metabolism SBML MML
rde00053 Ascorbate and aldarate metabolism SBML MML
rde00061 Fatty acid biosynthesis SBML MML
rde00062 Fatty acid elongation in mitochondria SBML MML
rde00071 Fatty acid metabolism SBML MML
rde00072 Synthesis and degradation of ketone bodies SBML MML
rde00100 (Undocumented) SBML MML
rde00120 (Undocumented) SBML MML
rde00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
rde00150 Androgen and estrogen metabolism SBML MML
rde00220 (Undocumented) SBML MML
rde00230 Purine metabolism SBML MML
rde00240 Pyrimidine metabolism SBML MML
rde00251 (Undocumented) SBML MML
rde00252 (Undocumented) SBML MML
rde00260 Glycine, serine and threonine metabolism SBML MML
rde00271 (Undocumented) SBML MML
rde00272 (Undocumented) SBML MML
rde00280 Valine, leucine and isoleucine degradation SBML MML
rde00281 Geraniol degradation SBML MML
rde00290 Valine, leucine and isoleucine biosynthesis SBML MML
rde00300 Lysine biosynthesis SBML MML
rde00310 Lysine degradation SBML MML
rde00311 Penicillin and cephalosporin biosynthesis SBML MML
rde00330 Arginine and proline metabolism SBML MML
rde00340 Histidine metabolism SBML MML
rde00350 Tyrosine metabolism SBML MML
rde00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
rde00360 Phenylalanine metabolism SBML MML
rde00361 gamma-Hexachlorocyclohexane degradation SBML MML
rde00362 (Undocumented) SBML MML
rde00363 Bisphenol A degradation SBML MML
rde00364 Fluorobenzoate degradation SBML MML
rde00380 Tryptophan metabolism SBML MML
rde00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
rde00401 Novobiocin biosynthesis SBML MML
rde00410 beta-Alanine metabolism SBML MML
rde00430 Taurine and hypotaurine metabolism SBML MML
rde00440 Phosphonate and phosphinate metabolism SBML MML
rde00450 Selenoamino acid metabolism SBML MML
rde00460 (Undocumented) SBML MML
rde00471 D-Glutamine and D-glutamate metabolism SBML MML
rde00472 D-Arginine and D-ornithine metabolism SBML MML
rde00473 D-Alanine metabolism SBML MML
rde00480 Glutathione metabolism SBML MML
rde00500 Starch and sucrose metabolism SBML MML
rde00520 Amino sugar and nucleotide sugar metabolism SBML MML
rde00521 Streptomycin biosynthesis SBML MML
rde00523 Polyketide sugar unit biosynthesis SBML MML
rde00530 (Undocumented) SBML MML
rde00540 Lipopolysaccharide biosynthesis SBML MML
rde00550 Peptidoglycan biosynthesis SBML MML
rde00561 Glycerolipid metabolism SBML MML
rde00562 Inositol phosphate metabolism SBML MML
rde00564 Glycerophospholipid metabolism SBML MML
rde00565 Ether lipid metabolism SBML MML
rde00590 Arachidonic acid metabolism SBML MML
rde00592 alpha-Linolenic acid metabolism SBML MML
rde00600 Sphingolipid metabolism SBML MML
rde00620 Pyruvate metabolism SBML MML
rde00622 Toluene and xylene degradation SBML MML
rde00623 2,4-Dichlorobenzoate degradation SBML MML
rde00624 1- and 2-Methylnaphthalene degradation SBML MML
rde00625 (Undocumented) SBML MML
rde00626 Naphthalene and anthracene degradation SBML MML
rde00627 1,4-Dichlorobenzene degradation SBML MML
rde00628 Fluorene degradation SBML MML
rde00630 Glyoxylate and dicarboxylate metabolism SBML MML
rde00631 1,2-Dichloroethane degradation SBML MML
rde00632 (Undocumented) SBML MML
rde00640 Propanoate metabolism SBML MML
rde00641 3-Chloroacrylic acid degradation SBML MML
rde00642 Ethylbenzene degradation SBML MML
rde00643 Styrene degradation SBML MML
rde00650 Butanoate metabolism SBML MML
rde00660 C5-Branched dibasic acid metabolism SBML MML
rde00670 One carbon pool by folate SBML MML
rde00680 Methane metabolism SBML MML
rde00710 (Undocumented) SBML MML
rde00720 (Undocumented) SBML MML
rde00730 Thiamine metabolism SBML MML
rde00740 Riboflavin metabolism SBML MML
rde00750 Vitamin B6 metabolism SBML MML
rde00760 Nicotinate and nicotinamide metabolism SBML MML
rde00770 Pantothenate and CoA biosynthesis SBML MML
rde00780 Biotin metabolism SBML MML
rde00785 Lipoic acid metabolism SBML MML
rde00790 Folate biosynthesis SBML MML
rde00791 Atrazine degradation SBML MML
rde00860 Porphyrin and chlorophyll metabolism SBML MML
rde00900 Terpenoid backbone biosynthesis SBML MML
rde00903 (Undocumented) SBML MML
rde00906 Carotenoid biosynthesis SBML MML
rde00910 Nitrogen metabolism SBML MML
rde00920 Sulfur metabolism SBML MML
rde00930 Caprolactam degradation SBML MML
rde00940 (Undocumented) SBML MML
rde00950 (Undocumented) SBML MML
rde00960 (Undocumented) SBML MML
rde00970 Aminoacyl-tRNA biosynthesis SBML MML
rde00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
rde00982 (Undocumented) SBML MML
rde00983 (Undocumented) SBML MML

Model development and archiving support at provided by the following grants: NIH U01HL122199 Analyzing the Cardiac Power Grid, 09/15/2015 - 05/31/2020, NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.