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Kegg pathway models for JSim

Organism rru: Rhodospirillum rubrum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Java WS
rru00010 Glycolysis / Gluconeogenesis SBML MML
rru00020 Citrate cycle (TCA cycle) SBML MML
rru00030 Pentose phosphate pathway SBML MML
rru00031 (Undocumented) SBML MML
rru00040 Pentose and glucuronate interconversions SBML MML
rru00051 Fructose and mannose metabolism SBML MML
rru00052 Galactose metabolism SBML MML
rru00053 Ascorbate and aldarate metabolism SBML MML
rru00061 Fatty acid biosynthesis SBML MML
rru00062 Fatty acid elongation in mitochondria SBML MML
rru00071 Fatty acid metabolism SBML MML
rru00072 Synthesis and degradation of ketone bodies SBML MML
rru00100 (Undocumented) SBML MML
rru00120 (Undocumented) SBML MML
rru00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
rru00140 (Undocumented) SBML MML
rru00150 Androgen and estrogen metabolism SBML MML
rru00220 (Undocumented) SBML MML
rru00230 Purine metabolism SBML MML
rru00240 Pyrimidine metabolism SBML MML
rru00251 (Undocumented) SBML MML
rru00252 (Undocumented) SBML MML
rru00260 Glycine, serine and threonine metabolism SBML MML
rru00271 (Undocumented) SBML MML
rru00272 (Undocumented) SBML MML
rru00280 Valine, leucine and isoleucine degradation SBML MML
rru00281 Geraniol degradation SBML MML
rru00290 Valine, leucine and isoleucine biosynthesis SBML MML
rru00300 Lysine biosynthesis SBML MML
rru00310 Lysine degradation SBML MML
rru00311 Penicillin and cephalosporin biosynthesis SBML MML
rru00330 Arginine and proline metabolism SBML MML
rru00340 Histidine metabolism SBML MML
rru00350 Tyrosine metabolism SBML MML
rru00360 Phenylalanine metabolism SBML MML
rru00361 gamma-Hexachlorocyclohexane degradation SBML MML
rru00362 (Undocumented) SBML MML
rru00364 Fluorobenzoate degradation SBML MML
rru00380 Tryptophan metabolism SBML MML
rru00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
rru00401 Novobiocin biosynthesis SBML MML
rru00410 beta-Alanine metabolism SBML MML
rru00430 Taurine and hypotaurine metabolism SBML MML
rru00450 Selenoamino acid metabolism SBML MML
rru00460 (Undocumented) SBML MML
rru00471 D-Glutamine and D-glutamate metabolism SBML MML
rru00472 D-Arginine and D-ornithine metabolism SBML MML
rru00473 D-Alanine metabolism SBML MML
rru00480 Glutathione metabolism SBML MML
rru00500 Starch and sucrose metabolism SBML MML
rru00520 Amino sugar and nucleotide sugar metabolism SBML MML
rru00521 Streptomycin biosynthesis SBML MML
rru00523 Polyketide sugar unit biosynthesis SBML MML
rru00530 (Undocumented) SBML MML
rru00540 Lipopolysaccharide biosynthesis SBML MML
rru00550 Peptidoglycan biosynthesis SBML MML
rru00561 Glycerolipid metabolism SBML MML
rru00562 Inositol phosphate metabolism SBML MML
rru00564 Glycerophospholipid metabolism SBML MML
rru00565 Ether lipid metabolism SBML MML
rru00590 Arachidonic acid metabolism SBML MML
rru00592 alpha-Linolenic acid metabolism SBML MML
rru00620 Pyruvate metabolism SBML MML
rru00622 Toluene and xylene degradation SBML MML
rru00624 1- and 2-Methylnaphthalene degradation SBML MML
rru00627 1,4-Dichlorobenzene degradation SBML MML
rru00630 Glyoxylate and dicarboxylate metabolism SBML MML
rru00632 (Undocumented) SBML MML
rru00640 Propanoate metabolism SBML MML
rru00641 3-Chloroacrylic acid degradation SBML MML
rru00643 Styrene degradation SBML MML
rru00650 Butanoate metabolism SBML MML
rru00660 C5-Branched dibasic acid metabolism SBML MML
rru00670 One carbon pool by folate SBML MML
rru00680 Methane metabolism SBML MML
rru00710 (Undocumented) SBML MML
rru00720 (Undocumented) SBML MML
rru00730 Thiamine metabolism SBML MML
rru00740 Riboflavin metabolism SBML MML
rru00750 Vitamin B6 metabolism SBML MML
rru00760 Nicotinate and nicotinamide metabolism SBML MML
rru00770 Pantothenate and CoA biosynthesis SBML MML
rru00780 Biotin metabolism SBML MML
rru00785 Lipoic acid metabolism SBML MML
rru00790 Folate biosynthesis SBML MML
rru00860 Porphyrin and chlorophyll metabolism SBML MML
rru00900 Terpenoid backbone biosynthesis SBML MML
rru00903 (Undocumented) SBML MML
rru00906 Carotenoid biosynthesis SBML MML
rru00910 Nitrogen metabolism SBML MML
rru00920 Sulfur metabolism SBML MML
rru00930 Caprolactam degradation SBML MML
rru00940 (Undocumented) SBML MML
rru00941 (Undocumented) SBML MML
rru00970 Aminoacyl-tRNA biosynthesis SBML MML
rru00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
rru00982 (Undocumented) SBML MML
rru00983 (Undocumented) SBML MML

Model development and archiving support at provided by the following grants: NIH U01HL122199 Analyzing the Cardiac Power Grid, 09/15/2015 - 05/31/2020, NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.